Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01763 ATGCAACAAACCCAGCTTGCTTATATGAACTCTTCGTCGACTCAACTAGTCCTCGCGAAAAGGATGGGTATATATGATCCATTCCATCAAGTGAACATGTGGGGGGACAGCTTCAAAATTGATGGAAGCTTGAATTCAGTTGCTACACCAATGTTCATGATGAAGCCAAGCATGCAAAACAATCCTGAATGTACTCCTCATGAATCAAGGGAACCTTCTGGAGATGATCAAGAGAGTAATGAGAAAACTGATAGTAAGGTGCTAAGACGTCAAGCACAAAATCGTGAGGCTGCACGAAAATGTCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCCGTGTGAAGCTCATGCAATTGGAATTGGAGATTGAGAAAGCAAAAAAGCAGGGTATGTACATACGCAGTACACCAGATGTTAGTTATATGGGATCATCCGGAACAATTAACCCAGGGATAACCTTGTTTGAACTTGAATATGGACAATGGATTGAAGAGCTCGATAGACAAAATGAAGAACTGAGAAATGCATTACACACTCGTGACTCTGATATGCAGCTTCATCTACTTGTTGAGAGTTGCTTGAGCCACTACTCAAATCTTTTCAGGATGAAAGCAGAGGCAGCAAAAGCAGATGTCTTTTATATGATCTGTGGCGCATGGAAAGCATCAGTGGAACGCCTTTATCTTTGGATTGGAGGATCCCGTCCATCACAGCTTCTAAATATTATTGTACCACAGCTTGAGCCTTTGACTGATCAACAAATTGTGAGTATTAACAAGCTCCGGCTTTCATCTCAGCAAGCTGAAGATGCCCTTTCAATTGGATTGGACAAACTCCAGCAGAGTCTAGTCCACAACATTCCATCAGATCCCTTAGCTATAGGACACTACGGCTTTGAGATGGCTGCTGCAATGGACAAGGGTGAAGCACTAGAAGGTTTTGTAAACCAGCTTGTTCCTCAGGCAGACCACCTTAGGCAGCAAACTCTGCTCTACATGTCAAGGATTCTGACACCTGGGCAAACTGCTCAAGGCTTGTTGGCTATGGGGGAATACTTCCATCGTCTTCGAACTCTTAGTTCTTTATGGACTGCTCATTCATCTGATCCTTCCTTTCCTACTTACCTCTCAAACTAA 1146 0.4319 MQQTQLAYMNSSSTQLVLAKRMGIYDPFHQVNMWGDSFKIDGSLNSVATPMFMMKPSMQNNPECTPHESREPSGDDQESNEKTDSKVLRRQAQNREAARKCRLRKKAYVQQLETSRVKLMQLELEIEKAKKQGMYIRSTPDVSYMGSSGTINPGITLFELEYGQWIEELDRQNEELRNALHTRDSDMQLHLLVESCLSHYSNLFRMKAEAAKADVFYMICGAWKASVERLYLWIGGSRPSQLLNIIVPQLEPLTDQQIVSINKLRLSSQQAEDALSIGLDKLQQSLVHNIPSDPLAIGHYGFEMAAAMDKGEALEGFVNQLVPQADHLRQQTLLYMSRILTPGQTAQGLLAMGEYFHRLRTLSSLWTAHSSDPSFPTYLSN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01763 381 SUPERFAMILY Leucine zipper domain 87 119 IPR046347 GO:0003700|GO:0006355
Vimu1g01763 381 Coils Coil 166 186 - -
Vimu1g01763 381 ProSiteProfiles DOG1 domain profile. 155 369 IPR025422 GO:0006351|GO:0043565
Vimu1g01763 381 PANTHER TRANSCRIPTION FACTOR TGA9 10 370 - -
Vimu1g01763 381 MobiDBLite consensus disorder prediction 54 98 - -
Vimu1g01763 381 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 89 104 IPR004827 GO:0003700|GO:0006355
Vimu1g01763 381 Pfam bZIP transcription factor 85 121 IPR004827 GO:0003700|GO:0006355
Vimu1g01763 381 MobiDBLite consensus disorder prediction 68 98 - -
Vimu1g01763 381 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 84 119 IPR004827 GO:0003700|GO:0006355
Vimu1g01763 381 FunFam BZIP family transcription factor 85 134 - -
Vimu1g01763 381 SMART brlzneu 81 142 IPR004827 GO:0003700|GO:0006355
Vimu1g01763 381 Gene3D - 85 138 - -
Vimu1g01763 381 Coils Coil 105 132 - -
Vimu1g01763 381 Pfam Seed dormancy control 174 247 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01763 Vimu-Chr1 18974866 18978842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01763 10 374 Calmodulin-binding Proteins AT1G77920 53.034 6.34e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu1g01763 DOG1 6.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01763 K14431 - gmx:100526976 645.58