Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01760 ATGCCTCTGCCACAGTCTCCGCCCAACCCTCGCAGCGTCGATCCCAAAATCTGGCGGGCATGCGCGGGCGCCGCTGTGCACATTCCGAAGCTGCATTCTAGGGTTTACTACTTCCCGCAGGGCCACATGGAGCACGCTTCTCCGTCACATTCTCTCTCCCCTCCCTTCCGTTCCCTCCCCTTCGTTCCCTGCCTTGTGTCCTCCCGTGATTTGCTTGCTGATCCATTCTCCGACGAGGTCTTCGCCAGGCTCCTCCTCACTCCACTCCCTCACCCGTTCCACCGAAACAACCAAAACGACGACAGCAACATCCAAACCGACGACGAAGAGCGCGAGTTCCAAAACGGCGTCGTTTCGTTCTCCAAAATCCTCACACCCTCCGACGCCAACAACGGCGGCGGCTTCTCCGTGCCGCGCTTCTGTGCCGACTCTGTCTTCCCTCCGCTCGATTTCCGCGCCGATCCTCCGGTCCAGCTCCTCTCCGTCACTGACGTCCACGGCGTCGCGTGGCGGTTTCGCCACATATACCGCGGTACGCCACGTCGGCACCTCTTCACAACAGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCATAGCCGGCGATTCCGTTGTCTTTGTCAAGGACTCCGACGGGAACATCTCGGTCGGGATCCGCCGTGCGACGCGGTTCCTCTCCTCATCCTCTCCTGTGGAGGAGGAGCAGTCGCCGGCGCAGGGAGAGGGGTTTCCGCGGTACGCGACGAGGAGAGTATCGCCGAAGGCAGTGAAGGCCGCAGAGGAGTGCGTGTCGCGGAACGCGCCATTTGAGGTGGTGTATTATCCGAGGGCGGGTTTTGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGACGCGATGAGGTGCGCGTGGGCTGGTGGAATGAGAGTGAAGATAGGAATGGAGACTGAGGATTCTTCTAGGATGACGTGGTTTCAAGGGACGGTGACTTCTGCGTATGCCTCTGATAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTACAAAATGCAAAACGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCTCACTTGCACTTCATACAGCCTTTTCCCCTTCAAAAAGGTTTAGAGCTGACCAGGGATCTGGACTGTTAAGTGATAGGGAGGGAGACCCCTTCTTTCCTATGACAGGTTTCCCTAACTCAACAATGGGAAAGATGGATAAAAAATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAGTTTTTCCAACTTTTTAAACGATAACTCTTATCTGTACATGGGTAGTAGTTCCTTTGGGAACAATACAGTGCAAAGTTTGGGAATTGTTTCTACGGATCTAAACATTAGCAGTTCTCAATCAGATGACATGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACAGAGTTTACTGGGACTAGGCATTGCAACACCAAAGTTGGTTCTGGTTCAATCCTCCTATTTGGTAAGATCATACAACCTGCTGAAAGTCCACATGATGCTGCTGATTACATAGAACGTGATGGTAGCGGGGGCAGCAAAGAAATCGAAGACAGTTGA 1623 0.5323 MPLPQSPPNPRSVDPKIWRACAGAAVHIPKLHSRVYYFPQGHMEHASPSHSLSPPFRSLPFVPCLVSSRDLLADPFSDEVFARLLLTPLPHPFHRNNQNDDSNIQTDDEEREFQNGVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLDFRADPPVQLLSVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFVKDSDGNISVGIRRATRFLSSSSPVEEEQSPAQGEGFPRYATRRVSPKAVKAAEECVSRNAPFEVVYYPRAGFADFVVSAEVVEDAMRCAWAGGMRVKIGMETEDSSRMTWFQGTVTSAYASDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSPSLALHTAFSPSKRFRADQGSGLLSDREGDPFFPMTGFPNSTMGKMDKKLLSYDTFPAGMQGARHDLFSASSFSNFLNDNSYLYMGSSSFGNNTVQSLGIVSTDLNISSSQSDDMSPHSQSSLHSFDTEFTGTRHCNTKVGSGSILLFGKIIQPAESPHDAADYIERDGSGGSKEIEDS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01760 540 CDD B3_DNA 119 220 IPR003340 GO:0003677
Vimu1g01760 540 Gene3D - 117 222 IPR015300 -
Vimu1g01760 540 Pfam Auxin response factor 260 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu1g01760 540 SUPERFAMILY DNA-binding pseudobarrel domain 114 227 IPR015300 -
Vimu1g01760 540 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Vimu1g01760 540 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 514 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu1g01760 540 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Vimu1g01760 540 MobiDBLite consensus disorder prediction 521 540 - -
Vimu1g01760 540 FunFam Auxin response factor 118 222 - -
Vimu1g01760 540 SMART B3_2 120 222 IPR003340 GO:0003677
Vimu1g01760 540 Gene3D - 297 364 - -
Vimu1g01760 540 MobiDBLite consensus disorder prediction 519 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01760 Vimu-Chr1 18877163 18880066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01760 9 538 B3 DNA Binding Superfamily AT1G77850 48.036 4.19e-160 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu1g01760 B3 2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01760 - - gmx:100805638 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01760 1 18877163 18880066 Vimu1g01760 1 18877163 18880066 ECH
Vimu1g01760 1 18877163 18880066 Vimu10g02228 10 32661978 32665017 PCT