Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01757 ATGGCACCTTCCACTGCTAAGTTCAACGACAGCTTGCTAGAATCAGAAACTGTTCTGTTGGTTACAAAGATCTTTGCGCGAACAAAAACATCACCAAAAACCGAAGCTACAACCTCAGGCTTGCAGAAAATGAAAACGAATCTTTGCCCTGAAAGTGAAAGTGTCTCAGCCCAGAAGAAGAGAGAGATAATGGAAGATCTTGTTAAGGGTCATAAAGCTGCTACTGAACTAAGACTTCTGCTTCAAAACCCCTTTGGGACTGAACCCTCTCTCTCTTCTCATCACCTCATAGCCAAGGTGCTCAGATCTTTCACACAAGCTCTTACTATTATCCATCCTTCTCCTTTGGCACCTGCTTCTGCAGATGGGCTGGCTCATCGGAATCCCCTGTTTTCCGGAAAAAATGGGCCGTCTGTGCCCCGTTCCGGCAACTGTTCGACATCTGGAGATTGCAGTGAGAAGAGATCCAAAAAGGGTGGGAGAGGTCGCTACAACAGAAGTGCCAAAGGGTTTTATTGTTCAGTTACTGGCACAAGAACCCTTCTCCGGTTGCTTATTAGGATAATCACCGAGAGATTTGATGAATTGGGATGCGTACGAATAAAGAGTGTACTCACATGGACTGAGCTATCTTACACTACTGATGACAATCATGCATGGAGGAAGTATGGACAAAAGAAAATTCTGAATTCTGAATTCCCTAGAGGATTAAGAGTGAAAACAAGCGCGAGGACTGAGCGGGCACCGCCACTCGGCAGTAGTAAAAGAACAACACGGTTCGGTTTCAATCGGAAACAGATCCAGCATTTAATACCACAACTCAACTTTCACATCATTCCACTCTCCGCCATTAATGACAAAACTAACCATTGTCCGGATCCGCTTGTAAGATACATTCGAGGGGTAAGGCGGTCAGCAGGCAGCGAGGCCGGACGGTCACAGACGACCAATCGTAACCTTAATCCCAAGCCCATGTCCACCACTATAAATACAGGTCAAAGGTCCCAGGTAGGCAGCAGGTACCCTCCGGGCATTCGGAATACGGGAGTACGCGGGTGGAGTCAGATAGCAGATCGACCGAGAAGAAGAAATTGTGTAGGTTTGGAACTCGGCCCTATACCGGAACAACCGGCAGATCGAATCATACACGGGGCGGCCCTCTATCTCTTGGAGGGCGGCGTGGAACTTGAATCCATCCGTCCCACACCGCCCGGTGGATGGCCAGTGGTAAGGGGGTATGACTGGGCCCCGCATGACGTGGGGACCTATGAATCCGAGTTTCAGAGCCGGGGAGTCCTCTTGGAGTGGGCAAACCAGTCTTTCGTGGCTCGCGATGAGGCGGACGCCCAGCTCATTCGATTGGGCGAAGGGGACAAACTCCGAAGATTTCTTTTTCGTGTATACATATCTGTTTCGTCGCATGATGGCCGCCGTCCTGAAGAGGATGAACGTTGCCCCCGCCCAACTACACCCGAACGGTTGGGCCTGTATCCAGGCTTTCATGGTGGTGTGTTCGGCGTTAGGCGTCGAGCTTTCGACCTCCGTTTTCTTTCACTACTTCCACGTCCGGTCGGTTACGACGCGGGGTTGGGTGTCGTTGACGTCCATTCAGCAGGTGAATTTGTGGATCCGTCCGGCGAGCCCCTATTTCCCTTTTATTGGACTGAGGAGCCGTCCCGCATAACGCCGGTGCCGGCTTGCGATCTGACTCCGTCCGAGCGAGATGCCGTAAAGCTTATTAATGATCTTCCCCGTCGCCTCCCTACCCTCAAGCTAGTCGAATGCCTATGCCACGAGGATTTTATTAATGTGGCCCCCCGAAAGACGAAGTATGTTCCTCCCACTCAGAAGAAAGACCCTCGCCTGACTGTTGGCGGTGATGTGAAGATTCCCCCTCCGAAACCTACCTTCAAGTTCGTCCACCGAGGGACCGACGTTGACCCCACCCCCGTGGGCATTCCATTGACCGCTGCAACCGGGGCCGCTGAGGTCGCACCTACCAACCCGCCCCCTGGATCGGCCCCCCAAGTGACCGTGGCTGACACCGGGAAAACCGCAGCCGGTCTCTCCAACCCTCCACTTGCGGATGCCCCTCGCAAGAAGAAGAAGAGGTCTAAAGAAGGCGAAAAATCTTCTTCTAAGAGAAGCAAACGAGACCACACTCCTCAACCTCTACCGGGCGGTCTTATGGATCCAGCTTTCGGCGTCAGCGACCGGTTGGACTTCCGTATGAGCTCGGCTCAGCGAGAAATTATGGAGCAGCTCTCGGAGCAACAGCTGCTCAAGGCCACCCTGGAGCATAGTAGTCGGGGGGCTATGCTAATGTGGTATGCTGAGAGGTTCGCCGACCGCCGGGGGCTGGATGCCATCCAGAGGGAGTTGGCATCCGAGAAGAAAGCGGCGGCGGAGGCGAAAGCCAGCCTGGAGGCGTTCACCCTTGAACACTCCAACTGTGAGTCAGAGCGGACGGGTTTGCAAAGGAAACTGGCGGATGCGTGTGCCGAAGTGGAAACCCTTACCCAGAAGCTTAACGCTTTGGGGTTGAAGTACGAGGCAGAACGGGAAGAGAGTAGTCGCCAACGAGCCGCCTTGGCTGAGGCGAACAAGAAGGTCTCAACCCGGGACGAGGAGCTGGTTGAGATGCACGCCGAAAACATCCGCCTGCAAGGAGAACAACAGCAAGCGGCGGATACTATCGCGCGCTTAAATCAGGATATTCAACTGGAGCACGAGGAGGGTTTTTTCAAGGCCATCCGCCAAGCCGCCTACTTTTTCAACTTTGACCCGACCTCCGTGGACTTTGATCTGGGGATGGATGTCCACAAGGGGAAGATGGCGCCTCTTTCGGAAATCCCCGGAGAAGAGGATGGCGCTCCGCCAGCTGACGGTAGTTGA 2895 0.5351 MAPSTAKFNDSLLESETVLLVTKIFARTKTSPKTEATTSGLQKMKTNLCPESESVSAQKKREIMEDLVKGHKAATELRLLLQNPFGTEPSLSSHHLIAKVLRSFTQALTIIHPSPLAPASADGLAHRNPLFSGKNGPSVPRSGNCSTSGDCSEKRSKKGGRGRYNRSAKGFYCSVTGTRTLLRLLIRIITERFDELGCVRIKSVLTWTELSYTTDDNHAWRKYGQKKILNSEFPRGLRVKTSARTERAPPLGSSKRTTRFGFNRKQIQHLIPQLNFHIIPLSAINDKTNHCPDPLVRYIRGVRRSAGSEAGRSQTTNRNLNPKPMSTTINTGQRSQVGSRYPPGIRNTGVRGWSQIADRPRRRNCVGLELGPIPEQPADRIIHGAALYLLEGGVELESIRPTPPGGWPVVRGYDWAPHDVGTYESEFQSRGVLLEWANQSFVARDEADAQLIRLGEGDKLRRFLFRVYISVSSHDGRRPEEDERCPRPTTPERLGLYPGFHGGVFGVRRRAFDLRFLSLLPRPVGYDAGLGVVDVHSAGEFVDPSGEPLFPFYWTEEPSRITPVPACDLTPSERDAVKLINDLPRRLPTLKLVECLCHEDFINVAPRKTKYVPPTQKKDPRLTVGGDVKIPPPKPTFKFVHRGTDVDPTPVGIPLTAATGAAEVAPTNPPPGSAPQVTVADTGKTAAGLSNPPLADAPRKKKKRSKEGEKSSSKRSKRDHTPQPLPGGLMDPAFGVSDRLDFRMSSAQREIMEQLSEQQLLKATLEHSSRGAMLMWYAERFADRRGLDAIQRELASEKKAAAEAKASLEAFTLEHSNCESERTGLQRKLADACAEVETLTQKLNALGLKYEAEREESSRQRAALAEANKKVSTRDEELVEMHAENIRLQGEQQQAADTIARLNQDIQLEHEEGFFKAIRQAAYFFNFDPTSVDFDLGMDVHKGKMAPLSEIPGEEDGAPPADGS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01757 964 SUPERFAMILY WRKY DNA-binding domain 211 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g01757 964 Gene3D WRKY domain 199 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g01757 964 Coils Coil 822 870 - -
Vimu1g01757 964 MobiDBLite consensus disorder prediction 308 342 - -
Vimu1g01757 964 MobiDBLite consensus disorder prediction 684 734 - -
Vimu1g01757 964 MobiDBLite consensus disorder prediction 696 721 - -
Vimu1g01757 964 Pfam WRKY DNA -binding domain 215 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01757 964 MobiDBLite consensus disorder prediction 135 150 - -
Vimu1g01757 964 MobiDBLite consensus disorder prediction 612 654 - -
Vimu1g01757 964 MobiDBLite consensus disorder prediction 305 351 - -
Vimu1g01757 964 Coils Coil 787 807 - -
Vimu1g01757 964 ProSiteProfiles WRKY domain profile. 215 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01757 964 MobiDBLite consensus disorder prediction 127 163 - -
Vimu1g01757 964 SMART WRKY_cls 214 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01757 Vimu-Chr1 18771433 18777028 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01757 59 235 WRKY Transcription Factor Family AT3G56400 28.889 2.43e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g01757 WRKY 2.5e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01757 - - vum:124822494 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01757 1 18771433 18777028 Vimu1g01757 1 18771433 18777028 ECH
Vimu1g01757 1 18771433 18777028 Vimu10g01559 10 17430163 17432168 PCT