Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01755 ATGAATAACATGGTTGAGAGTGTCTCAGCAGAGAAGAAGAGAGAGATAATGGAAGAAATTATTAAGGGTAAAAAAGCTGCTATTGAGCTAAAGATTCTGCTTCAGAAACCCTCTGGGAGTGAACCCTTTCTCTCTTATCACCAACTCATGGCCAGCGTCCTCACATCTTTCACACAATCTCTTTCTATTATTTCCTCTTCTTCTTCAGAATCCAGTTCACCAGATGGGCTGCCTCATCGGAATCTTCTCAATCCCACCGAATATAGCTCGCCGGTGACCGGTTCCGGCAATGATCCAACGTCTGGACATTGCAGTGAGAAGAGATCCCAAAAGGGTGGGAGAGGTCGCTACAATAGATGCAAGGGTGCACCGAGAAAGGCCGTACTGTCTTGCACCACTGATGATAAGTATGCATGGAGGAAGTATGGACAAAAGGGAATCCTGAATTATGAATTTCCAAGGAGTTACTTCAGGTGCAGTCACAAGCATGATCAAGGTTGTAAAGCGACCAAACAGGTGCAACTAGAACAAGACAATCCACGTATGTATCGAATTACGTACATTGGTCTTCACACATGCAATGACATTCCCAAGGTTACACACAAAACCACAGATTTTTCCACTGGGGAATCATATCTTCTGCATTCTGATCGTAGCTCCAATGTAAAGGATGATCTCATTAGCTCACCAAACTTAGCTATAAAACCAGTTTTTCCCAAAGAAACTTACACATCAAGTGATCTTACTGATCACAAGTTATTAGATTCTAGCATGTGGTTAGAATATTGGAAGGAATCTGAACCATTCAACTCTACCATTATGCCCTTAAGGAAGAAATTTGATAACAGTGCAGATAATGCATATTCATGTGCAGACATTCAAAATCTGGACATGGATTTTGGTGGGGTGGCATCTGTTCTTTTCGACACGCACTTTCACTTTGATGAAGAT 951 0.4196 MNNMVESVSAEKKREIMEEIIKGKKAAIELKILLQKPSGSEPFLSYHQLMASVLTSFTQSLSIISSSSSESSSPDGLPHRNLLNPTEYSSPVTGSGNDPTSGHCSEKRSQKGGRGRYNRCKGAPRKAVLSCTTDDKYAWRKYGQKGILNYEFPRSYFRCSHKHDQGCKATKQVQLEQDNPRMYRITYIGLHTCNDIPKVTHKTTDFSTGESYLLHSDRSSNVKDDLISSPNLAIKPVFPKETYTSSDLTDHKLLDSSMWLEYWKESEPFNSTIMPLRKKFDNSADNAYSCADIQNLDMDFGGVASVLFDTHFHFDED 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01755 317 MobiDBLite consensus disorder prediction 67 120 - -
Vimu1g01755 317 Gene3D WRKY domain 121 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g01755 317 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 205 IPR044810 GO:0003700
Vimu1g01755 317 MobiDBLite consensus disorder prediction 67 103 - -
Vimu1g01755 317 Pfam WRKY DNA -binding domain 134 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01755 317 ProSiteProfiles WRKY domain profile. 134 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01755 317 SMART WRKY_cls 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01755 317 SUPERFAMILY WRKY DNA-binding domain 132 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01755 Vimu-Chr1 18744729 18746411 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01755 12 194 WRKY Transcription Factor Family AT3G56400 40.314 1.90e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g01755 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01755 - - gmx:100796071 271.937