Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01752 AAGGGTTCTCCATATCCAAGAAGCTACTATAGGTGCAGCAGTTCCAAAGGGTGTTTGGTGAGGAAACAGGTTGAAAGGAACCACTTAGATCCTGTTATTTTTTTGGTTACCTACACTGCTGAACACAACCATCCAAAACCTAATAACATAGCATTCATTCCAATTCCACAAAATACAACTTCAAACATAACTAACAGCTCAAAGAACTCTAATAACATTAAAAACTACACAACATATCATAAAATTAAATTCATCTTCTCTACTTCACATATTTTAAACACCATCAAAGAAAAATATATAACATTGCATACATTTAACAACGACATATCAAATTCTTCATCAACCCTTCATCGGCAAAGTCTTCATCATTCACAAAATAGAGAACTCACCTCTACGGCAGCGACAACTCCTACGTGTATCAGCCCTCCTCGCACAACAAAAGCCCCTTCGTCAAATAGCCCGTAG 465 0.3699 KGSPYPRSYYRCSSSKGCLVRKQVERNHLDPVIFLVTYTAEHNHPKPNNIAFIPIPQNTTSNITNSSKNSNNIKNYTTYHKIKFIFSTSHILNTIKEKYITLHTFNNDISNSSSTLHRQSLHHSQNRELTSTAATTPTCISPPRTTKAPSSNSP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01752 154 SMART WRKY_cls 1 46 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01752 154 ProSiteProfiles WRKY domain profile. 1 47 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01752 154 Gene3D WRKY domain 1 48 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g01752 154 Pfam WRKY DNA -binding domain 1 45 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01752 154 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 112 IPR044810 GO:0003700
Vimu1g01752 154 MobiDBLite consensus disorder prediction 113 154 - -
Vimu1g01752 154 SUPERFAMILY WRKY DNA-binding domain 1 47 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01752 Vimu-Chr1 18451080 18451544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01752 1 47 WRKY Transcription Factor Family AT4G01250 80.851 6.96e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g01752 WRKY 4e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01752 K13425 - gmx:102663255 85.1149