Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01750 ATGCCGAATCCCGAGGCTAACTGCAGCCAACACTCCCGCTCCCGAGCCCGTCCCTCTACGTCAGCAGCGCCACGGCAACCGGTCAGGGCCCGGGCCTCTCTGCGCCAGCTGCTGCGCGTGGCGTCAGTGGCGAGCGGTATTCAGTTCGGTTGGGCCTTGCAGCTCTCCCTCCTCACTCCCTACGTCCAGCAGCTTGGCATCCCTCACCAATGGGCCAGCATCATCTGGCTCTGCGGCCCGGTCTCCGGCCTCTTCGTCCAGCCTCTCGTCGGTCACATGAGCGACCGCTGCACCAGCCGCTTCGGCCGCCGCCGCCCCTTCATCTTCGTCGGCGCTGTCTCCATCGTGATCGCCGTCGTCATCATCGCCTACGCCGCCGACATCGGCTGGATCCTTGGCGACACCGCCACCTACCGACCGGCTGCCATAACTGTCTTCATAATCGGCTTTTGGATCCTCGACGTCGCCAACAACGTCACGCAAGGTCCCTGTCGAGCCTTGCTCAGTGATCTCACCAATTGCGCGATTTTGCTTATGTTTATTGCATTTGACTTGGTTCATTTACTGAACTTTGACCGTTATGATCAGCATGCGTTGTTACCGTTGACCATTCGTGTTGTTGGAGTCAGGGGGTGTTATCTTTTTCATTACATGCTTCTTCTGTTGCTAGATTTGTTTACTGGTTCTTGTCTTGCTTTAAACTCATGGGTTGTGAGTCGAACGGGTGAGCCGAACAGTGGAAAGGAAGGGAACCAAAGGGTAGAAAAGGGGAATCGAGGGCCAAATGATAGGGGAATAGGAGTGAAGGAGCCGAACGGTATCTTCAATAATACGAACGGTGGCTGCAAGGGAGGAAGGAGTGAAGGGTCGAACGAGGGGAGGGAGTGGCTTAAAGCATCGAAAGACATCGAAGACCATTTTGTCAGGGCCTACGATTCTGGAAAAGAGGAGGCAGGGGGAAGCGAGTCTAGCCGAACGGTAGGAGGTGGGGGAGTGCCGAACGGCAAGGATCCTCGAAGGACACGGGTTGCAAATGCTTACTACTCACTGTTTATGGCCGTTGGTAATATTCTTGGCTATGCAACTGGATCATACAGTGGTTGGTACAAGGTTTTCCCTTTTACACTTTCCCCTGCTTGCACAATTAGTTGTGCAAATCTCAAGTCTGCTTTCTTTCTTGACATTGCTTTCATTGCCGTCACAACATATATCAGCATCATGGCAGCTCATGAAGTGCCTCTAAATTCTAATATGGTGGCCCACGCTGAAGCAGTGGTCGAGGAGTCAGGTAGTGCCGAAGAAGCTTTCATGTGGGAATTATTTGGGACATTCAAATATTTTTCAACCCCTGTCTGGATAATACTGTCTGTTACTGCTCTCACATGGATTGGGTGGTTTCCATTTACTCTATTTGATACTGATTGGATGGGTCGAGAGATTTATGGTGGTGATCCAAATCAAGGCCTTATTTATGATACTGGAGTTAGAATGGGAGCACTTGGTTTGTTGCTTAATTCAGTTGTTCTTGCATTGACATCATTGCTCATGGAAAGGTTATGCAGGAAAAGGGGGGCTGGTTTTGTGTGGGGAATCTCAAATATCGTTATGACATTTTGCTTTCTTGCAATGCTTGTATTAACCTATGTGGCAAGTAGCATAGGCTATGCAGGCAAAGATCTACCTCCACCTGGCATTGTGATAGCCGCGTTGATTATCTTTACCATTCTTGGGTTTCCCCTGGCAATCACTTATAGTGTTCCATATGCCCTAATTTCCACACATATCGAGTCTTTAGGACTTGGCCAAGGGTTATCAATGGGTGTCCTAAATCTGGCAATAGTGGTCCCACAGGTTGCTACTTGTGGGTCAATGTTGGCATGGGTAGAGCACTTAACACGCTACATTAGCACGCTTGTTGCCATTGTTCAGTGGGGGATAATAGTGTCCCTGGGAAGTGGACCATGGGATCAGCTATTTGGTGGAGGAAACTCCCCAGCCTTTGCTGTGGGAGCTGTTTCAACCGTTATCAGTGGACTCATAGCTATCTTGGCTATTCCTCGATCTGGTGCTCAAAAGGCTCGAAGTCTTGCGTGA 2094 0.5033 MPNPEANCSQHSRSRARPSTSAAPRQPVRARASLRQLLRVASVASGIQFGWALQLSLLTPYVQQLGIPHQWASIIWLCGPVSGLFVQPLVGHMSDRCTSRFGRRRPFIFVGAVSIVIAVVIIAYAADIGWILGDTATYRPAAITVFIIGFWILDVANNVTQGPCRALLSDLTNCAILLMFIAFDLVHLLNFDRYDQHALLPLTIRVVGVRGCYLFHYMLLLLLDLFTGSCLALNSWVVSRTGEPNSGKEGNQRVEKGNRGPNDRGIGVKEPNGIFNNTNGGCKGGRSEGSNEGREWLKASKDIEDHFVRAYDSGKEEAGGSESSRTVGGGGVPNGKDPRRTRVANAYYSLFMAVGNILGYATGSYSGWYKVFPFTLSPACTISCANLKSAFFLDIAFIAVTTYISIMAAHEVPLNSNMVAHAEAVVEESGSAEEAFMWELFGTFKYFSTPVWIILSVTALTWIGWFPFTLFDTDWMGREIYGGDPNQGLIYDTGVRMGALGLLLNSVVLALTSLLMERLCRKRGAGFVWGISNIVMTFCFLAMLVLTYVASSIGYAGKDLPPPGIVIAALIIFTILGFPLAITYSVPYALISTHIESLGLGQGLSMGVLNLAIVVPQVATCGSMLAWVEHLTRYISTLVAIVQWGIIVSLGSGPWDQLFGGGNSPAFAVGAVSTVISGLIAILAIPRSGAQKARSLA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01750 697 MobiDBLite consensus disorder prediction 1 21 - -
Vimu1g01750 697 Pfam MFS/sugar transport protein 52 172 - -
Vimu1g01750 697 SUPERFAMILY MFS general substrate transporter 14 173 IPR036259 -
Vimu1g01750 697 MobiDBLite consensus disorder prediction 241 270 - -
Vimu1g01750 697 MobiDBLite consensus disorder prediction 314 338 - -
Vimu1g01750 697 MobiDBLite consensus disorder prediction 1 28 - -
Vimu1g01750 697 CDD MFS_SLC45_SUC 37 683 - -
Vimu1g01750 697 Gene3D MFS general substrate transporter like domains 34 183 IPR036259 -
Vimu1g01750 697 MobiDBLite consensus disorder prediction 249 263 - -
Vimu1g01750 697 PANTHER SUGAR TRANSPORTER 338 683 - -
Vimu1g01750 697 SUPERFAMILY MFS general substrate transporter 338 689 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01750 Vimu-Chr1 18429695 18443256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01750 336 692 Sucrose Transporter Gene Family AT1G09960 64.706 9.83e-144 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01750 K15378 - gmx:100820483 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01750 1 18429695 18443256 Vimu1g01750 1 18429695 18443256 ECH