Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01735 ATGCAAAATAAAAAATTATTCAGTGTAAACGTGCCCAAATTATTACCCAAATTAGAAACATTGGAAGTTCAAAACTGTGATTCTGTCAAAACTATATTTGATGTCAAATGTGCCCAAGAGACACTCACTTTTCCTCTGAAGAAATTAGTTTTACGGAAGTTGCCAAATCTGGAAACAGTTTATAGTGAAGTTACAGAAGCTAATCCAGCTCTTCCAAAAGGAACAAATCCTAAGCTTACGTTCTCCTGTGTGACATCATTGACACTATGTGAATTGCCCAACTTCAAGCATAATACTATATATTACATTTATGATGATGGAGCACCAACATTTGAGCTAATTATACCCAACTTAGAGCATCTAACAGTGGGTAAAAATGAATTAAAGATGATTGTGGACGGCGAATTTCAGAGAAACCTTTTACACAAGTTAAAAGTTCTCGGTGTGTGCTTTGATATTGAGTGTGATGAATTTCCGGAGTATGGATTTCTACAGCAGTTGCCAAATGTAAAGAAGCTTGTGGTGTGGAGTAGTTCATTCAAGCTGAATGAATTACGGTTGGAGTCCCTTGAAGAGCTAGTTTCCATTGGATTAGAAAACTCATGGACTGAGCCCTTTGTCAAAAATCTAGAAACTTTTGAAGTCATTAGCTGTTCCACCAAAAGTTTGGGTCAACTTCAAAGAATGGAGATAAAAGAGTGTAAATCAATTGAAGAAATGGTATCTAAAGAAAGGGAGGAATCAAATGAGGATGAGATAATATTTTCGCAGCTCAGTCGTTTAAAACTTGATAGGTTATTGAATCTCCGATGGTTCTACAGGGGGAGTTTAAGTTTCCCATGCTTACAAGAATTATCAGTGAAATATTGTGATGAGATGATCAAGAATGAAGCCTTTCAGAAGGAGAGATCACTTGGCAAGCATTTGTCAAGAATGAAGCATTTGTCCGTTGGAGCAGTTCTGACCACGCCAACCCCATCAACACTGCATCAGAATTTGCGAAACAAGTGCGTGACTCAGGAACTGCACAAATTGGTCCCAACTGGGGTTCCTACAATTCTCACTTCTCGTTCTTCAGATGGCAGAATATTATCCGTTGAAAAGTTAATAGAAGGTTGTTATGATTCAACCGAGTTGCCGCAAGTTCCTGTGGCACAGTCAGACACTTCTGCTGATGTCAGTGGATTCCAAGATGATATTTTCTTGGCCTTCATTCCAATGTTTCACATCTATGGATTTGTATTCTTTGCATTAGGATTGTTGTGTGTTGGTATAACAACAGTTTTGATGCAGAAGTTTGACTTCCAAGATATGCTTGATGCAATCCAGAAGCACAAGGTTAACAACGTGCCAGCAGTGCCAGCAGTGCCAGCAGTGATCCTTGCACTAGTGAAGCACTCAAGGAAAGCTAGGTGTGACTTGTCCAGTCTAAGAAGAATGGGGACAGGTGCTGCACCTTTGAGCAAGGAAGTGGCACTGGAGTCCAGGAAAATGTTTCCATGGGTTGAACTAAGGCAAGGTTATGGACTAACAGAAAGTAGTGGTGGAGCAACATTTTTTGTCTCAGATAAAGATGCTAAAGCTCATCCAGATTCATGTGGGAAGCTGATTCCAACATTTTCTCCAAAACCTTTGCCCCCTAACAAAGAAGGAGAGTTGTGGTTAAAAAGTCCTACTATTATGAAAGAATATATGGGAAATTTGGAGGCAACAAGTTCAACAATTGATTCAGAAGGTTGGTTGAGAACTGGTGATCTTAGTTACATTGATGATAATGGATTTGTTCACATAGTTGAACGGATAAAAGAGCTAATCAAGCACAACGGGTATCAGGTGGCTCCTGCAGAACTGGAGTCTGTGTTGCTAAGTCACCCTCTTATAGCCGATGCAGCAGTTATACCGTGTTTATTACACGCCGTAAGAGCAATAATTGCTAGGCATAGCTCGGGTGCATATTGCTACACATATTGGAATTTGGTAGAGCAAGGGATCACCAAAGTTGTAGATGGAGCAACACCTTCAGAGGCAGAAGTTAAATTGGTGGAGGAGCAGAAGTTAAAAGACTTGAAGATAAAGAATTACCTTTATCAAGCTATAGACCGTGAAGTGTTGGATACAATACTTAATGATGACACATCTAAAGACATTTGGGATTCAATGAAGCAAAAATTCCAAGCCTCTACTAGGGTGAAAAGAGCACAGTTGCAAGCATTACGCAGAGAGTTTGAAATTTTACAGATGAAAGAAGGAGAGACGGTCAATTCGTATTTTGCTCGTACTCTAAAGATTGCTAAAAGTATGAAAGCGTGTGGTGAACATATGGGTGAGAGTGTTATCACTGCAAAAATACTACGGTCCATGGTCTCTAAATTTAACTACGTTGTTTGCTCAATTGAAGAATCAAACAATTTAGAGATTATGACAATTGATGAGTTACAAAGTAGTCTCCTTGTTCATGAGCAAAGAATGAACTGTAATGATGATGAAGAAAATGTGCTTCACATTACTAATGAAGATAAAGGAGGAAGAGGAAGAGGAAGGGGAAGACATTTCATTAGAGGCGGTCAAGGAAGAAGAAGAGGAAGAGGAAGACAACCCTTCAACAAAGCAAACATTGAGTGCTTTAAATGTCACAAACTTGAACATTTTCAATATGAATGTCCCACCTGGCAAAATGCAAACTATGCTGAGGCTGAGGAAGAAAACTGGTTTCTTGACTCTGGGTGCAGCAATCATATGAGTGGAAATAAGGAGTGGTTTTCAGACATGGATGAAAGCTTTAGGCACACTGTCAAGCTTGGTAATAATACTAGATTGAATGTAATGGGAAAAGGAAATGTCAGACTGAATGCCAATGGATTTACAAATAATGGGAAATGTGCAATTCATCATCCTGGACGTGAGCAGATTATGGATGTTCAAATGAGTGGAAATAGGATGTTTCCTCTGGCAGCCACTATGATGCCAGAAAATCCTGTATGTTTTCAGACGGAGTCAGTAAATGAATCTCGTCTTTGGCACCACCGATTTGGTCATTTACATTACAATGGCTTGAAGTTACTTTCCTCTAAAGAGATGGTTAATGGGCTACCCTCAATTAGGACTCCACAAGATTTATGTACACATTGCTTAGTAGGAAAGCAACATCGAAATTCGATCCCAAAGAAAGGTGTTTGGAGAGCATCAACCAAGCTTCAACTTGTGCATGCAGACATATGTGGGCCTATCAAACCCACCTCAATCAGTAACAAGAGGTATATCTTAAGTTTAATTGATGATTTTTCTCGAAAAGCTTGGATTTACCTCCTCCATGAAAAATCTGAAACTTTTTCTATATTTAAAAGTTTCAAAGTCTTTGTTGAAAAAGAATCTCGTGTATGTATTACTTGTTTAAGGACAGATAGAGGTGGTGAATTTACCTCAAATGAATTTGGAGAATGTTGCAAAAATCAAGGCATAGGACGACAGTTAACAACAACTTACACTCCTCAACAAAATGGAGTGGCTGAGAGGAAAAACAGAACAATAATGAATATGGTGCGTACCATGTTGGCTAAAAAACAAGTTCCTAAAATATTCTGGGCAGAAGCTGCCAAATGGTGTGTGCATGTCCTCAACAGCGGCGTTAAACCCACAATGAAATATTTTCGTGTCTTTGGCTGCATAGCTCACACTCACATACCAGATCAACAAAGATTCAAACTTAATAACAAAAGCAAAAGGTGTATCCTGTTAGGAGTAAGCGATGAATCAAAAGCCTATCGCTTGTTCGATCCAATCTCGAAGAAAGTTATTATCAGTAAAGATGTTATTTTCGAAGAACAAAAGAGATGGAATTGGGAGGAAACTGGAACAGAATGTGAGCAAGATATTTCAGATTCCGAAAAAGATGAGTGGGAAGAAGAAAATAATGATAATGATACTGTTGGAGATTCCACAAGGGCTGATGTACACTTTGATGAACCACACAATCATATTCATGAAAATCCAATTGAAGGGAGGGTTAGACGAAATAGAAGAGAACCAGAAGGTTTGTCAGATGAAGATGCTTTGATGATGGTAACCGAAAAAGATCCCTTGTCATTTGAAGAAGCTGAAAAAAATAAGAAATGGAGGAATGCAATGATGGAAGAGATGAAATCAATAGAGAAAAATAAGACTTGGGAGTTAGTTGATGCCCCAAGTGGAGTGAAGCCCATTGGAGTCAAGTGGATTTTCAAGACTAAGCTCAATGAGAATGGTGAAATAGACAAATTTAAAGCAAGATTAGTGGCAAAAGGATATGCTCAAGAATATGGAGTTGATTACACAGAGGTGTTTGCCCCGGTTGCTCAGCTTGACACCATTCGCATCATACTTGCATTAGCAGCTCATTATAGTTGGACAGTTTTTCAATTAGACGTGAAAAGTGCCTTCCTTCATGGTGAACTCAAGGAAGATATTTATGTGCAACAGCCTATTGGTTTTCTCAAGAAAGGGGAAGAAGACAAAGTTTACAAATTAAGAAAGACATTGTATGGCCTTAAATAG 4530 0.3879 MQNKKLFSVNVPKLLPKLETLEVQNCDSVKTIFDVKCAQETLTFPLKKLVLRKLPNLETVYSEVTEANPALPKGTNPKLTFSCVTSLTLCELPNFKHNTIYYIYDDGAPTFELIIPNLEHLTVGKNELKMIVDGEFQRNLLHKLKVLGVCFDIECDEFPEYGFLQQLPNVKKLVVWSSSFKLNELRLESLEELVSIGLENSWTEPFVKNLETFEVISCSTKSLGQLQRMEIKECKSIEEMVSKEREESNEDEIIFSQLSRLKLDRLLNLRWFYRGSLSFPCLQELSVKYCDEMIKNEAFQKERSLGKHLSRMKHLSVGAVLTTPTPSTLHQNLRNKCVTQELHKLVPTGVPTILTSRSSDGRILSVEKLIEGCYDSTELPQVPVAQSDTSADVSGFQDDIFLAFIPMFHIYGFVFFALGLLCVGITTVLMQKFDFQDMLDAIQKHKVNNVPAVPAVPAVILALVKHSRKARCDLSSLRRMGTGAAPLSKEVALESRKMFPWVELRQGYGLTESSGGATFFVSDKDAKAHPDSCGKLIPTFSPKPLPPNKEGELWLKSPTIMKEYMGNLEATSSTIDSEGWLRTGDLSYIDDNGFVHIVERIKELIKHNGYQVAPAELESVLLSHPLIADAAVIPCLLHAVRAIIARHSSGAYCYTYWNLVEQGITKVVDGATPSEAEVKLVEEQKLKDLKIKNYLYQAIDREVLDTILNDDTSKDIWDSMKQKFQASTRVKRAQLQALRREFEILQMKEGETVNSYFARTLKIAKSMKACGEHMGESVITAKILRSMVSKFNYVVCSIEESNNLEIMTIDELQSSLLVHEQRMNCNDDEENVLHITNEDKGGRGRGRGRHFIRGGQGRRRGRGRQPFNKANIECFKCHKLEHFQYECPTWQNANYAEAEEENWFLDSGCSNHMSGNKEWFSDMDESFRHTVKLGNNTRLNVMGKGNVRLNANGFTNNGKCAIHHPGREQIMDVQMSGNRMFPLAATMMPENPVCFQTESVNESRLWHHRFGHLHYNGLKLLSSKEMVNGLPSIRTPQDLCTHCLVGKQHRNSIPKKGVWRASTKLQLVHADICGPIKPTSISNKRYILSLIDDFSRKAWIYLLHEKSETFSIFKSFKVFVEKESRVCITCLRTDRGGEFTSNEFGECCKNQGIGRQLTTTYTPQQNGVAERKNRTIMNMVRTMLAKKQVPKIFWAEAAKWCVHVLNSGVKPTMKYFRVFGCIAHTHIPDQQRFKLNNKSKRCILLGVSDESKAYRLFDPISKKVIISKDVIFEEQKRWNWEETGTECEQDISDSEKDEWEEENNDNDTVGDSTRADVHFDEPHNHIHENPIEGRVRRNRREPEGLSDEDALMMVTEKDPLSFEEAEKNKKWRNAMMEEMKSIEKNKTWELVDAPSGVKPIGVKWIFKTKLNENGEIDKFKARLVAKGYAQEYGVDYTEVFAPVAQLDTIRIILALAAHYSWTVFQLDVKSAFLHGELKEDIYVQQPIGFLKKGEEDKVYKLRKTLYGLK 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01735 1509 Gene3D Ribonuclease Inhibitor 2 254 IPR032675 -
Vimu1g01735 1509 MobiDBLite consensus disorder prediction 1286 1306 - -
Vimu1g01735 1509 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1385 1509 IPR013103 -
Vimu1g01735 1509 SUPERFAMILY Acetyl-CoA synthetase-like 311 647 - -
Vimu1g01735 1509 Pfam Integrase core domain 1065 1163 IPR001584 GO:0015074
Vimu1g01735 1509 SUPERFAMILY Ribonuclease H-like 1059 1207 IPR012337 -
Vimu1g01735 1509 SUPERFAMILY Retrovirus zinc finger-like domains 854 892 IPR036875 GO:0003676|GO:0008270
Vimu1g01735 1509 Gene3D - 1058 1250 IPR036397 GO:0003676
Vimu1g01735 1509 MobiDBLite consensus disorder prediction 1283 1346 - -
Vimu1g01735 1509 Gene3D - 603 697 IPR045851 -
Vimu1g01735 1509 MobiDBLite consensus disorder prediction 1307 1346 - -
Vimu1g01735 1509 MobiDBLite consensus disorder prediction 846 864 - -
Vimu1g01735 1509 Gene3D - 383 602 IPR042099 -
Vimu1g01735 1509 Pfam AMP-binding enzyme 396 606 IPR000873 -
Vimu1g01735 1509 Pfam gag-polypeptide of LTR copia-type 687 824 - -
Vimu1g01735 1509 SUPERFAMILY DNA/RNA polymerases 1384 1509 IPR043502 -
Vimu1g01735 1509 ProSiteProfiles Integrase catalytic domain profile. 1050 1236 IPR001584 GO:0015074
Vimu1g01735 1509 SUPERFAMILY L domain-like 14 296 - -
Vimu1g01735 1509 PANTHER GAG-POL-RELATED RETROTRANSPOSON 1106 1509 - -
Vimu1g01735 1509 MobiDBLite consensus disorder prediction 837 864 - -
Vimu1g01735 1509 Pfam GAG-pre-integrase domain 980 1048 IPR025724 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01735 Vimu-Chr1 18039931 18047128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01735 397 634 Monolignol Biosynthesis Gene Families AT1G20500 45.968 1.09e-64 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01735 - - gmx:100794549 632.484