Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01733 ATGGAACTTTATGATAATGATTTCTTGGAGGAATCGATAGCTCTAAGAAGAGAACCATGGGATACCAATCCATGTTCACAAGAAAACCAGCTTTTCTCTAATGCTTGGAGTTTTGATTGTTTTGATCAAAACTATCAAGCTTTTCCTTCAAATTCTTTCTCATTTCAAGAAGTGCCCCGGAGTTACAACTTCGACTACACCTTCAATGAAATCTACAGTTCTTTATTTGATGAATTTTCTACACCCCAGATTGTAGATTCATCTTATAGCACCCTTGATGCTTCACATAGCACCCCTTCATTTGTTCCTCATGAAGATTATCCATTGTCTTTGATGGAAGAAGAAGATCCGAGTTTGCTTGGGGAAGAACTTCATTGTTTGGACCTTCAAGCCACATGCAAAATGGAGCCAAGCCATTCCCCTGAAATGCCTGTTTTCAACACAGATTCTTCTGTGGAAAGAAAGACTAGAGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGAAGAAGAAGGAAGAGATTAAACGACAGACTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACAGCTATTCTTGGAGACACTATTGATTATATGAAAGAGCTCTTGGAAAAGATTAACACTTTGAAGCAAGAAATAGAGGTGGATTCCAACACTGCTACCATTTTCAAGGATTTAAAGCCAAACGAAATCTTAGTAAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGAAATGCCAATACAAGGGTGGAGATCTGCTGTGCTGGGAAGCCAGGCTTGCTGCTGTCTACAGTAAACACATTGGAAACACTGGGCCTGGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGGAACTGCAGCAGAAGAAAATTCTGAGTTCAGAAGATATAAAACAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 999 0.3984 MELYDNDFLEESIALRREPWDTNPCSQENQLFSNAWSFDCFDQNYQAFPSNSFSFQEVPRSYNFDYTFNEIYSSLFDEFSTPQIVDSSYSTLDASHSTPSFVPHEDYPLSLMEEEDPSLLGEELHCLDLQATCKMEPSHSPEMPVFNTDSSVERKTRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINTLKQEIEVDSNTATIFKDLKPNEILVRNSPKFDVERRNANTRVEICCAGKPGLLLSTVNTLETLGLEIQQCVISCFNDFTVQASCSEELQQKKILSSEDIKQALFRSAGYGGRCL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01733 332 Gene3D - 150 227 IPR036638 GO:0046983
Vimu1g01733 332 SMART finulus 169 218 IPR011598 GO:0046983
Vimu1g01733 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 29 327 - -
Vimu1g01733 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 225 IPR036638 GO:0046983
Vimu1g01733 332 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Vimu1g01733 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Vimu1g01733 332 MobiDBLite consensus disorder prediction 137 168 - -
Vimu1g01733 332 Coils Coil 209 229 - -
Vimu1g01733 332 CDD ACT_UUR-ACR-like 258 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01733 Vimu-Chr1 18028015 18030033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01733 154 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.222 5.54e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g01733 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01733 - - vra:106764382 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01733 1 18028015 18030033 Vimu1g01733 1 18028015 18030033 ECH