Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01720 ATGGTGTTGAGGAAAGTGGGGAAGTATGAGATTGGAAGGACGGTTGGAGAAGGAACCTTTGCGAAGGTAAAGTTCGCTCAGAACACGGAAACTGGTGAGAGTGTTGCAATGAAGGTGCTCGACCGTAGCACCATTATCAAGCACAAAATGGTCGATCAGGTTCTAGCTAGCCGTACTAAGATTTATATCATATTGGAATTTATTACAGGTGGTGAATTGTTTGATAAAATTGTAAGCCATGGGCGTCTCAGCGAAGCTGACTGTAGAAGATACTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGTGTTTATCATAGAGATTTAAAGCCTGAAAATCTTTTACTTGATTCACAAGGAAATATTAAAATTTCAGATTTTGGTTTGAGTGCATTTCCAGAACAGGGGGTCAGTATGCTTCGGACAACTTGTGGGACTCCTAATTATGTAGCTCCCGAGGTACTCAGTCACAAGGGTTATAATGGTGCTCCAGCAGATGTTTGGTCCTGTGGAGTTATCCTCTATGTTCTACTGGCTGGATATCTTCCCTTTGACGAACTTGATCTAACCACGTTGTACATCACTGCTGTTGCTGCGAGTTCTTTTGATACAGACTTTCTTCACGGTGCCAAATGCTCAGGAAACACTGCTTTGTCTAACAATTTCTTTTTATCAAAGCTTTTATTGAGAAAGCACAGTTTTCATGCCCTACTTGGTTTCCAGTCGGAGCAAAGTCTTTATTGCACAGAATTTTGGACCCAAACCCTGAAAATGATTAGAACGCATCTAAGAAAGCCTAATAGTGTGATGATTATTGGTTTCATTAATATCAAGAACATGCTCGATTCATTCTTGCCTTTCACGGATATTTCTTCCATTTTCTGTTGCAGGCGTATAACCATTCAGCAGATAAGGAATGATGAGTGGTTTCAAAAGGAATATGTTCCAGTCAGTCTCCTCGAGTATGAAGATGTAAATCTGGACGATGTAAATGCTGCATTTGACAATGTTGAGGATCAGATCACTAATCAGCAATGTGAGAATGACGACATGGGTCCTCTAACTCTTAATGCATTCGACATGATAATTTTATCTCAAGGCTTAAACCTTGCAACCTTATTTGATCGCGGAGAGGACTCTGTTAAATACGTAACACGCTTCATCAGTCAAAAGGCACCAAAAGTGGTTTTATCAAGTATGGAAGTTGTGGCACAATCAATGGGGTTTAAGACGCATATTCGCAACTACAAGATGAGAATAGAGGGTATTCCAGCAAACAAGGCTTCTTATTTCTCCGTTATACTAGAAGTTTTTGAAATTGCTCCTACTTTCTTCATGGTGAACATCCAGAAAGCAGCTGGAGATTCCAATGAATATCTCAAGTTCTACAAGAATTTTTCTAACAATCTTGAGGATATCATATGGAAACCATCCCATGAGAAAAGCAAATTAAGGAACTCCAAGACTAATTGCAAAGAGCAGTAG 1494 0.3976 MVLRKVGKYEIGRTVGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQVLASRTKIYIILEFITGGELFDKIVSHGRLSEADCRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSAFPEQGVSMLRTTCGTPNYVAPEVLSHKGYNGAPADVWSCGVILYVLLAGYLPFDELDLTTLYITAVAASSFDTDFLHGAKCSGNTALSNNFFLSKLLLRKHSFHALLGFQSEQSLYCTEFWTQTLKMIRTHLRKPNSVMIIGFINIKNMLDSFLPFTDISSIFCCRRITIQQIRNDEWFQKEYVPVSLLEYEDVNLDDVNAAFDNVEDQITNQQCENDDMGPLTLNAFDMIILSQGLNLATLFDRGEDSVKYVTRFISQKAPKVVLSSMEVVAQSMGFKTHIRNYKMRIEGIPANKASYFSVILEVFEIAPTFFMVNIQKAAGDSNEYLKFYKNFSNNLEDIIWKPSHEKSKLRNSKTNCKEQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01720 497 Coils Coil 330 350 - -
Vimu1g01720 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
Vimu1g01720 497 Pfam Protein kinase domain 9 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01720 497 FunFam Maternal embryonic leucine zipper kinase 4 211 - -
Vimu1g01720 497 ProSiteProfiles Protein kinase domain profile. 9 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01720 497 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Vimu1g01720 497 Pfam NAF domain 356 414 IPR004041 GO:0007165
Vimu1g01720 497 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 464 - -
Vimu1g01720 497 SMART serkin_6 9 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01720 497 FunFam Non-specific serine/threonine protein kinase 353 479 - -
Vimu1g01720 497 Gene3D Kinase associated domain 1, KA1 353 479 - -
Vimu1g01720 497 ProSiteProfiles NAF domain profile. 354 378 IPR018451 GO:0007165
Vimu1g01720 497 SUPERFAMILY Protein kinase-like (PK-like) 6 317 IPR011009 -
Vimu1g01720 497 Gene3D Transferase(Phosphotransferase) domain 1 3 235 - -
Vimu1g01720 497 CDD CIPK_C 360 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01720 Vimu-Chr1 17792121 17800017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01720 5 478 CBL-interacting serine-threonine protein kinases AT1G01140 42.430 8.90e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu1g01720 Pkinase 1.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01720 - - pcin:129303603 630.172