Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01715 ATGGGGGAGGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTTCGTGGTGTCCGTCTGAAAAAGGATCAACTTCTAATGGATGAAATACAAGAACTAAATCGAAAGGGAAACCTCATACGCCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTTGTCAAGAAAACATGGAATTGAAAATGAAGGTCCATGGAACAAAAGATGATAGCGAAACAAACAGAGATTATGTTCTCACAAATGGTCTAGGCATAGGAGAGGATTTGCATGTGCCCGTGAATCTCCAGCTAAGCCAACCACAGCAACACTATAAGGCTCCTTCAGGAACTGCAAAATTGGGGTATGATCTTTCTATCATTTTAACTAGTACACCAATAATCATGTTGCAAAAGCATTGA 429 0.3846 MGEELSGLTVKELQNLENQLEISLRGVRLKKDQLLMDEIQELNRKGNLIRQENVELYKKVNLICQENMELKMKVHGTKDDSETNRDYVLTNGLGIGEDLHVPVNLQLSQPQQHYKAPSGTAKLGYDLSIILTSTPIIMLQKH 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01715 142 Pfam K-box region 1 60 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu1g01715 142 ProSiteProfiles K-box domain profile. 1 66 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01715 Vimu-Chr1 17629046 17629749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01715 1 125 MADS-box Gene Family AT3G57230 56.800 6.60e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01715 K09264 - gmx:100812413 221.476