Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01713 ATGCGTATTCGTAGCGCCACGCGTCAGCGTAGCAACGGTGGTGGCACACCTTTCGAGAAACATATAAAACACGAGAATCTGATTGGGCCACGTGTAGCCTCAGGGAAAACCACTAGTGGGTTTGGTATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACAAGTAGGCAAGTCACGTTCTCGAAACGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTATGCGATGCTGAAGTCGGAGTTATGATTTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGGTACATGATTCCTCTATCGATCTATTTTTCTTTCTCTTTTTGTGGATGTTGA 360 0.475 MRIRSATRQRSNGGGTPFEKHIKHENLIGPRVASGKTTSGFGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSRYMIPLSIYFSFSFCGC 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01713 119 ProSitePatterns MADS-box domain signature. 45 99 IPR002100 GO:0003677|GO:0046983
Vimu1g01713 119 PANTHER SERUM RESPONSE FACTOR HOMOLOG 43 103 - -
Vimu1g01713 119 MobiDBLite consensus disorder prediction 1 20 - -
Vimu1g01713 119 Gene3D - 55 109 IPR036879 GO:0003677|GO:0046983
Vimu1g01713 119 SMART madsneu2 43 102 IPR002100 GO:0003677|GO:0046983
Vimu1g01713 119 SUPERFAMILY SRF-like 43 114 IPR036879 GO:0003677|GO:0046983
Vimu1g01713 119 ProSiteProfiles MADS-box domain profile. 43 103 IPR002100 GO:0003677|GO:0046983
Vimu1g01713 119 PRINTS MADS domain signature 80 101 IPR002100 GO:0003677|GO:0046983
Vimu1g01713 119 PRINTS MADS domain signature 45 65 IPR002100 GO:0003677|GO:0046983
Vimu1g01713 119 PRINTS MADS domain signature 65 80 IPR002100 GO:0003677|GO:0046983
Vimu1g01713 119 CDD MADS_MEF2_like 44 102 IPR033896 GO:0000977|GO:0045944
Vimu1g01713 119 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 52 99 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01713 Vimu-Chr1 17614300 17615055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01713 43 105 MADS-box Gene Family AT2G14210 88.889 4.55e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu1g01713 SRF-TF 3.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01713 K09264 - aew:130776157 117.857