Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01707 ATGAAAGCGCAGGTTCAAAACATCAAAGTCATAGTTAAAAGGAAGAAAAGACCTTTTATAAAGGTACGAACGGCGACACTCCGACGGCACTGGGTGGTTGGAAGGAGAGAAGACGACACCGTCTACGTTTTGCCTTCGAACACCGGCACTACGGCGGCAATGCGGTGGCTAGGAGGAGTGAACACGACACCGTCTAGGTTTTGCCTTCGAACGCTGGCACTGCGGCAGCACTGGGTGGCTAGGTGGAGGGAAGACAACACTCTGGCGGCGACACTGGTGGCTGGTTGGAAGGAGAGGGATGCTACCCTGTCAATCTCCATCTTCAAAGTTATTCTTAAAACCAATCTTCAAAGGCTTAAAATATCAAACATATTCAGTGCCAAATATGGAGGTGGTTTGCCAAATCCTTTGTTCATGAAGCTTCCAAATGGAACTGAATGGAAAGTGATTTGGGAAAAAGACAACGGTGAGATTTGGCTGAGAGAGGGATGGAAGGAATTTGTGGAACATTATTCCTTAGACCATGGACATTTTGTTTTCTTTAAGTACGAATGA 555 0.4649 MKAQVQNIKVIVKRKKRPFIKVRTATLRRHWVVGRREDDTVYVLPSNTGTTAAMRWLGGVNTTPSRFCLRTLALRQHWVARWREDNTLAATLVAGWKERDATLSISIFKVILKTNLQRLKISNIFSAKYGGGLPNPLFMKLPNGTEWKVIWEKDNGEIWLREGWKEFVEHYSLDHGHFVFFKYE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01707 184 ProSiteProfiles B3 DNA-binding domain profile. 104 184 IPR003340 GO:0003677
Vimu1g01707 184 PANTHER B3 DOMAIN-CONTAINING 106 184 - -
Vimu1g01707 184 SUPERFAMILY DNA-binding pseudobarrel domain 107 183 IPR015300 -
Vimu1g01707 184 CDD B3_DNA 106 184 IPR003340 GO:0003677
Vimu1g01707 184 Gene3D - 101 184 IPR015300 -
Vimu1g01707 184 Pfam B3 DNA binding domain 114 183 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01707 Vimu-Chr1 17521486 17522565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01707 109 184 B3 DNA Binding Superfamily AT3G18990 33.333 1.21e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g01707 B3 5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01707 - - vum:124838217 171.014