Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01706 ATGGCATCACCAGCAGTGAAGCTTTATGTGGAAGACGATCAAGTGGTTATGGACAATGGCATAGTGCAAGTGTATATATCAAACCCTGGTGGATTTGTTACCAGAATTCAATATAGTGGCATTGATAATCTGCTTGAAACTCGTAACAAAAGTGGAGATAGAGGGTACTGGGACGTTGTTTGGAGTGTAGCTGGAAGTACTGGGACCACTGGGACATTTGAACGGTATGTGATGCTTTCTAATTCCTCAGGATTTTACTCCTACACCATCTTTGAACACTTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGACTGTTTACAAACTTAGTAAAGATAAGTTTCATTACATGGTGGTGTCTGATAATAGACAAAGATTTATGCCTCTCCCTGACGACAGATTGCCAGGAAGAGGAGAAGAACTTGTTCCACCAGAAGCAGTTTTGCTTGTTAATCCTTTGGAGCCAGAGTTTAAGGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTATGGTACATGGATGGATAAGTTCCCAATCTCAAACAAACCCATTTGTAGGGTTTTGGGTAATCATACCAAGCAATGAGTTTCGATCAGGTGGCCCAGTAAAACAGAACCTTACTTCCCATGTCGGCCCAATAAGCCTAGCTATGTTTCTGAGTGCTCATTACGCAGGAGAAGATATAGTTCTGAAACTGCAACCAAACGAGCCATGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTTAACACTTTATTAGATGGTGATGACCCCAAAGTGCTATGGGAAGATGCTAAAGATAAGACGAAGGCAGAAGTTCAAAGTTGGCCCTATGATTTTCCAGCCTCCGAAGATTTTCAGAAGTCTACCCAACGAGGCAGTGTCTGTGGCACATTACTAGTCCAAGACAGGTTTTTGAGTGATGAGTACATAGTAGCAGAAGGCGCTTATATAGGAGTGGCAGCACCGGGAGAAGCTGGATCATGGCAAAGAGAATGCAAGGGATACCAATTTTGGAGCAAAGCCAACGAGAAAGGATACTTCTCAATCAAGAATATACGCAGTGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAGTAATGTTCTCATCACCATAACACCAGGTTGTGAAATTGATGTTGGTGAGATTGTTTTTGAGGCTCCAAGAGATGGCCCAACATTATGGGAGATAGGCATTCCAGATCGTTCTGCCGCTGAATTCTATGTTCCTGATCCCAATCCCAACTACATCAATAAGCTTTTTGTTCATCATCCAGACAAGTATAGGCAATATGGGTTGTGGGAAAGGTATGCAGAATTATACCCAAATGAAGATTTAATTTACACTGTGGGTGTAAGTGATTATACAAAAGATTGGTTCTTTGCACAGGTCACAAGAAAGAAAGAAGATGGCAGTTACCAAGGAACTACATGGCAGATTAAGTTCAACCTCGATGACACAGAGGCAAGTAAAATCTACAAACTGCGGTTGGCACTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGAGTGAATGATCCAGAACAAGACCCTCCTCTGTTTACTACAGGGGTGATTGGAAAAGACTTCTCAATAGCTAGACATGGAATTCATGGACTATATTGGCTATTCAACATTGATGTGTCTGGTTTTTTGCTAGAAAAAGGTGTTAACACTCTGTTTTTAACTCAAACTGTGGCAACTGGTCCCTTGGCTCGCTTTCAGGGAGTAATGTATGATTATATACGCCTAGAAGGTCCTAACCCTTTTTCTGCTATACAAGAGTATTAA 1833 0.4157 MASPAVKLYVEDDQVVMDNGIVQVYISNPGGFVTRIQYSGIDNLLETRNKSGDRGYWDVVWSVAGSTGTTGTFERYVMLSNSSGFYSYTIFEHLQEWPAFNIPQIRTVYKLSKDKFHYMVVSDNRQRFMPLPDDRLPGRGEELVPPEAVLLVNPLEPEFKGEVDDKYQYSSENKDLMVHGWISSQSQTNPFVGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDPKVLWEDAKDKTKAEVQSWPYDFPASEDFQKSTQRGSVCGTLLVQDRFLSDEYIVAEGAYIGVAAPGEAGSWQRECKGYQFWSKANEKGYFSIKNIRSGDYNLYAWVPGFIGEYWSNVLITITPGCEIDVGEIVFEAPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLFVHHPDKYRQYGLWERYAELYPNEDLIYTVGVSDYTKDWFFAQVTRKKEDGSYQGTTWQIKFNLDDTEASKIYKLRLALASANVSELQVRVNDPEQDPPLFTTGVIGKDFSIARHGIHGLYWLFNIDVSGFLLEKGVNTLFLTQTVATGPLARFQGVMYDYIRLEGPNPFSAIQEY 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01706 610 FunFam Rhamnogalacturonate lyase B 295 394 - -
Vimu1g01706 610 Gene3D - 295 394 - -
Vimu1g01706 610 CDD RGL4_C 409 599 - -
Vimu1g01706 610 Pfam Rhamnogalacturonate lyase family 7 70 IPR010325 -
Vimu1g01706 610 Pfam Rhamnogalacturonate lyase family 74 163 IPR010325 -
Vimu1g01706 610 SUPERFAMILY Starch-binding domain-like 297 395 IPR013784 GO:0030246
Vimu1g01706 610 SUPERFAMILY Galactose-binding domain-like 404 599 IPR008979 -
Vimu1g01706 610 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 74 602 - -
Vimu1g01706 610 SUPERFAMILY Galactose mutarotase-like 12 257 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vimu1g01706 610 CDD RGL4_M 298 397 IPR029413 -
Vimu1g01706 610 CDD RGL4_N 6 266 - -
Vimu1g01706 610 Gene3D - 405 599 - -
Vimu1g01706 610 Pfam Polysaccharide lyase family 4, domain II 321 393 IPR029413 -
Vimu1g01706 610 Gene3D - 6 239 IPR014718 GO:0030246
Vimu1g01706 610 Pfam Polysaccharide lyase family 4, domain III 407 598 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01706 Vimu-Chr1 17511309 17517305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01706 1 602 Polysaccharide Lyase AT1G09890 58.934 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01706 K18195 - gmx:100815677 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01706 1 17511309 17517305 Vimu1g01706 1 17511309 17517305 ECH