Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01693 ATGCACCGTAATAAGGGGCAATTCACTTCTTCTAAGAAACAAGATGGAGCTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGACAGTCAATCAGAAACCTCATGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGTAGTTGTTGGTGTTCCACCTTTTGACGATGTTATTGTGCAGGGTGCTTTAAGAGACCTTTCCAAGAGAAATCATGAACAGTCTCTTGTACCAGTCGATGATGGTAACGTCTCTGATTGTCGGACTGCTGCCAACCCTGCGCATAACAATCTGGCTGCATACTCAGAGCATGATAATCCTGCTTTGATAGCTGATCGTAAAGTTTTCCAGTCCCAGAAAATGCTCGAGTAG 444 0.455 MHRNKGQFTSSKKQDGANSYGTDQDSGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRVVVGVPPFDDVIVQGALRDLSKRNHEQSLVPVDDGNVSDCRTAANPAHNNLAAYSEHDNPALIADRKVFQSQKMLE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01693 147 CDD ZnF_GATA 36 71 IPR000679 GO:0006355|GO:0043565
Vimu1g01693 147 PANTHER GATA TRANSCRIPTION FACTOR 28 1 105 IPR045280 GO:0006355
Vimu1g01693 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 73 - -
Vimu1g01693 147 ProSiteProfiles GATA-type zinc finger domain profile. 31 67 IPR000679 GO:0006355|GO:0043565
Vimu1g01693 147 MobiDBLite consensus disorder prediction 10 50 - -
Vimu1g01693 147 ProSitePatterns GATA-type zinc finger domain. 37 64 IPR000679 GO:0006355|GO:0043565
Vimu1g01693 147 Pfam GATA zinc finger 37 70 IPR000679 GO:0006355|GO:0043565
Vimu1g01693 147 SMART GATA_3 31 98 IPR000679 GO:0006355|GO:0043565
Vimu1g01693 147 MobiDBLite consensus disorder prediction 1 57 - -
Vimu1g01693 147 Gene3D - 27 100 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01693 Vimu-Chr1 17322735 17324050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01693 1 136 Tify Gene Family AT4G24470 53.061 1.99e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu1g01693 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01693 - - pvu:PHAVU_008G182900g 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01693 1 17322735 17324050 Vimu1g01693 1 17322735 17324050 ECH