Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01692 ATGGAGCCACCAGCAATGTACGGACACTCCCAGCCACTGAACATGCCTCCGCAGATCTCCGCCGCCGAAAGCGGCAACGGCTCCGGCCCCGACCCCGCCCTCGACGCCCACCACCACATTCACTATGAAACTCATGCGCTCGAAGACGGTGCCCCCGGTGCCATGGTCGTCGTCGAGGATGTCACTTCCGATGCGGTTTACGTCTCCGGCGCTGGAGGGCCTGAAGAGTCTAGTCAGCTTACGCTTTCGTTTCGTGGCCAAGTTTACGTCTTTGATGCTGTTACGCCTGATAAGGTTCAAGCGGTATTGTTACTGTTGGGTGGATGTGAACTGTCTTCGAGTGGTTCGCCATGTGTGGATGCGGTGCCTCAACAGAATCAGAGGGGTTCAATGGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCTGCGTCGTTAGATAGGTTCAGGAAGAAGAGGAAAGAGCGATGTTTTGATAAGAAAGTGAGATATGGTGTACGGCAAGAAGTTGCGCTCAGGTTTGATAATTAA 531 0.5367 MEPPAMYGHSQPLNMPPQISAAESGNGSGPDPALDAHHHIHYETHALEDGAPGAMVVVEDVTSDAVYVSGAGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDAVPQQNQRGSMEYPARCSLPQRAASLDRFRKKRKERCFDKKVRYGVRQEVALRFDN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01692 176 Pfam CCT motif 142 171 IPR010402 GO:0005515
Vimu1g01692 176 MobiDBLite consensus disorder prediction 1 33 - -
Vimu1g01692 176 ProSiteProfiles CCT domain profile. 142 176 IPR010402 GO:0005515
Vimu1g01692 176 PANTHER GATA TRANSCRIPTION FACTOR 28 9 173 IPR045280 GO:0006355
Vimu1g01692 176 Pfam tify domain 74 107 IPR010399 -
Vimu1g01692 176 SMART tify_2 73 108 IPR010399 -
Vimu1g01692 176 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01692 Vimu-Chr1 17320268 17321612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01692 74 174 Tify Gene Family AT4G24470 66.337 1.62e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu1g01692 tify 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01692 - - pvu:PHAVU_008G182900g 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01692 1 17320268 17321612 Vimu1g01692 1 17320268 17321612 ECH
Vimu1g01692 1 17320268 17321612 Vimu10g02588 10 37252685 37257307 PCT