Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01689 ATGCCTCACAGAGCAACTTACTTTTTCCCGAGGCAGTTCCCTGAGAGGGCTTTGGATGAGTCTTCGAAGCAGAGATTGGATCATGAAAAGAGAAAAATCGTCAACTCTATCAAATCATCGGATACGACTTTTGCATATGAAAGCGACACGCCGAAAAAGCCAGCACCGGTTCCCACGCGTACCGCTAAAGACAACGACGACGTCGTTTTCTCATCCGGTAACCAATCCGCAGTCTCCGACCTCTTCACCGCTACCGACAAGTTCCGCACCAAACAGAAGCAAATCGCCGCCTTCTGCAATTGGTTGATCGACAAAAAGAAGGACCTCAATCGACCGAGTCACCGTTTAAGAACCTATCCTAACGACGACGAGGACGAAGAAGATGAACGTGAGCATCTACTTCCTCCGCCGCCGCCTGAGGCGGCGGCGGCGCAGGTGGTGAAGGATGCTGTTGACCGGAGCTTCGACCGGCAGGTTTCGCTGCCGCGGTTGTCCAGCGGAAGCAGCTACGCCGGGAGCTTGTTCACGCTGGACGGCACCGCCACATTCTCCAGCGACGTTACGAAAGACGAAACGTCGTCGTTTCAAGTCTTTACTGAAGAAGACGCGAGAAAAAGGAAAGAAGAGGAAGAAAACGTAAAACGCAATACGACGCAGAAGTATAGGGAGAGCTACTACCTGCAAATGGCCTTGGCGCAGAGACTCTCTTGTTTAGCAAGCCTCGCTTCTGAACCTGTTCTCGCACTCGACGCTGGTCCCGAAACCTGGGACGCTGAATCGGTTTCGTATCGTTTATGGGTGAGTGGATGTTTGTCGTACACGGACAAGATATCTGACGGTTTTTACAACATATTGGGGATGAATCCGTACCTTTGGGTGATGTGCAATGATGTAGAGGAAGAAGGGAAGCGTTTACCGACGCTGATGGCGCTAAAGGCGGTTGAACCAAGCGAGACCTCCATAGAGGTAGTTCTTTTCGATAGACACGAGGACTCCCGGCTTAAGGAGCTTCAAGATAAAGCTCAGGAATTGTATTCTGCTTCGGAGAACGCGTTGGTGCTGGTGGAGAAACTCGGAAAACTCGTTGCCATATGCATGGGGGGTACGTTCCCTGTGGAGCAAGGAGATCTACACAAGCGGTGGAAGTTGGTTAGCAAGAGGTTGAGGAACTTTCACCAATGTGTTGTGCTTCCTGTTGGTAGCTTATCCAGTGGACTCTGTAGGCATCGCGCGATTCTCTTCAAGAGATTGGCAGATTACATTGGTTTGCCATGCCGCATTGCTCGAGGTTGTAGGTACTGTGTTTCAGATCATAGATCGTCTTGCCTTGTCAAGATTAAAGATGACAGACAGCTCTCAAGAGAATATGTAGTTGATCTGGTTGGGGAGCCAGGAAATATCCTTGGGCCAGATTCCTCAATTAACGGAGCATATGCGTCATCAATACCTTCCCCATTTCAAATTTCTCATTTGAAAGAATCCCAATCTCCATATGTGGATGTTACAGCATGTTCTCAATCTCTTGATAACACTTATTCAGGCTTTGTACATGAAGATCAACGAGTTGACGAAACTGATCGACTGAAAAACAATAATGGCTCTATTTATTCTGCAATGGATCAAACTCGTGGAGGTACAGAACAACCTCTATTTCCTTGTGGCTTGAAAGGGAATGATAAGGAATGTGCGGTTCTGGGTTTATTAAATTTTCCTCCCATCTATGAAGGTGTTTCTGAAGATCTTGACGAAGTCTCTGGAGCATCGATTCATGAATACCCCAGGCTCTGTAAAGATTCAGTTGTAGTTATAGAAGCTTCCAAAGAGATCGTTGTAAAGGGGAATTCTGGGGTAAAAAGCATCTATAAGCAATCTATACTGAGCTCATCCACCGAATCAGAACAGGAACACGTAAAAAATAAACTTGAAAATCAGGGTGCTGGTAATATTCCAAGATACTTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATACCCTGGGACGATTTACGAATCAAAGAGCGTGTTGGTGCTGGATCATTTGGGACAGTGTATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTTTAACAGTTCAGGATTTCCAGGATGATCAGTTGAAAGAATTTCTGAGAGAGGTTGCCATAATGAAACGAGTTCGTCATCCAAATGTGGTGCTTTTCATGGGTGCGGTTACTAAACGTCCACATCTATCTATAGTGACAGAATATTTGCCTAGGGGCAGTTTATTCCGCCTAATACATAAGCCAGCGTCTGGTGAAATTCTAGATCCTAGGAGAAGGTTGCGGATGGCTTTAGACGTGGCTAAGGGGATAAATTATCTCCACTGTCTGAAGCCTCCCATTGTGCACTGGGATCTCAAAACCCCGAACTTGTTAGTGGACAGAAATTGGACTGTCAAGGTGTGTGATTTTGGATTGTCTAGATTTAAGGCGAATACTTTCTTGTCATCAAAATCTGTTGCTGGAACTCCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTTTACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCCTGCAACAACCGTGGAATGGACTTAGTCATGCCCAGGTAGTTGGAGCTGTCGCCTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATTTCCCCAGCGTTGGCCTCTCTCATGGAAGCTTGTTGGGCAGATAAACCTGCTGATCGCCCATCATTTGCAAGCATAGTTGATTCTCTAAAGAAGCTACTGAAGTCACCAGCTGATGCGATTAAAATGGGTGGAAAATAA 2826 0.4657 MPHRATYFFPRQFPERALDESSKQRLDHEKRKIVNSIKSSDTTFAYESDTPKKPAPVPTRTAKDNDDVVFSSGNQSAVSDLFTATDKFRTKQKQIAAFCNWLIDKKKDLNRPSHRLRTYPNDDEDEEDEREHLLPPPPPEAAAAQVVKDAVDRSFDRQVSLPRLSSGSSYAGSLFTLDGTATFSSDVTKDETSSFQVFTEEDARKRKEEEENVKRNTTQKYRESYYLQMALAQRLSCLASLASEPVLALDAGPETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEEGKRLPTLMALKAVEPSETSIEVVLFDRHEDSRLKELQDKAQELYSASENALVLVEKLGKLVAICMGGTFPVEQGDLHKRWKLVSKRLRNFHQCVVLPVGSLSSGLCRHRAILFKRLADYIGLPCRIARGCRYCVSDHRSSCLVKIKDDRQLSREYVVDLVGEPGNILGPDSSINGAYASSIPSPFQISHLKESQSPYVDVTACSQSLDNTYSGFVHEDQRVDETDRLKNNNGSIYSAMDQTRGGTEQPLFPCGLKGNDKECAVLGLLNFPPIYEGVSEDLDEVSGASIHEYPRLCKDSVVVIEASKEIVVKGNSGVKSIYKQSILSSSTESEQEHVKNKLENQGAGNIPRYLNLEPSLAMDWLEIPWDDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHKPASGEILDPRRRLRMALDVAKGINYLHCLKPPIVHWDLKTPNLLVDRNWTVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTLQQPWNGLSHAQVVGAVAFQNRRLAIPPNISPALASLMEACWADKPADRPSFASIVDSLKKLLKSPADAIKMGGK 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01689 941 FunFam Serine/threonine-protein kinase isoform 1 661 749 - -
Vimu1g01689 941 ProSiteProfiles Protein kinase domain profile. 671 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01689 941 CDD STKc_MAP3K-like 677 925 - -
Vimu1g01689 941 MobiDBLite consensus disorder prediction 112 140 - -
Vimu1g01689 941 Pfam Ethylene-responsive protein kinase Le-CTR1 258 467 - -
Vimu1g01689 941 Gene3D Phosphorylase Kinase; domain 1 664 748 - -
Vimu1g01689 941 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 195 930 - -
Vimu1g01689 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Vimu1g01689 941 ProSitePatterns Protein kinases ATP-binding region signature. 677 698 IPR017441 GO:0005524
Vimu1g01689 941 Gene3D Transferase(Phosphotransferase) domain 1 750 937 - -
Vimu1g01689 941 SUPERFAMILY Protein kinase-like (PK-like) 650 924 IPR011009 -
Vimu1g01689 941 Coils Coil 200 220 - -
Vimu1g01689 941 Pfam Protein tyrosine and serine/threonine kinase 671 925 IPR001245 GO:0004672|GO:0006468
Vimu1g01689 941 PRINTS Tyrosine kinase catalytic domain signature 745 758 IPR001245 GO:0004672|GO:0006468
Vimu1g01689 941 PRINTS Tyrosine kinase catalytic domain signature 852 874 IPR001245 GO:0004672|GO:0006468
Vimu1g01689 941 PRINTS Tyrosine kinase catalytic domain signature 786 804 IPR001245 GO:0004672|GO:0006468
Vimu1g01689 941 PRINTS Tyrosine kinase catalytic domain signature 896 918 IPR001245 GO:0004672|GO:0006468
Vimu1g01689 941 MobiDBLite consensus disorder prediction 37 65 - -
Vimu1g01689 941 FunFam Serine/threonine-protein kinase CTR1 750 935 - -
Vimu1g01689 941 SMART serkin_6 671 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01689 Vimu-Chr1 17227957 17233469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01689 1 940 MAP Kinase Kinase Kinase AT4G24480 56.809 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu1g01689 PK_Tyr_Ser-Thr 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01689 - - gmx:100786546 1636.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01689 1 17227957 17233469 Vimu1g01689 1 17227957 17233469 ECH
Vimu2g02133 2 16007563 16011708 Vimu1g01689 1 17227957 17233469 PCT