Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01667 ATGGGTTCGCGCGAGTTCGCCCTCCTCGCGCAGGAAACTGAACCCCTTCTCGAAGGCTCTGACCAGATCCTCGCCATCGTCGACGTGCTCCTCGCCGCCGACAAGCGCGTCAACAACCACCCAGACTGGTACGCCATCCTTCAGGTCGATCGGCGGTCCGACGACCTTGACCTCATAAAGAAACAGTACCGCCGCCTTGCGCTCCTCCTTCATCCCGATAAGTCCCGCTTCGCCTACGCTGACCACGCCTTCAAGCTCGTCGCCGACGCGTGGGCTCTATTTGCGGATCCCGTGAAGAAGTCTGTGTACGACAAAGAGCTCTCGTTCTTCTCCCGCGTCGATTTGTCTGTTCCCGGATGGGTCCAGCAGGAAAAGCTCTCAGTCCGCAGGCCTGGGCCTGGGCCTGAACCCGGGCCAAGCACCCGCAACAGTGCCTCGGCCCGCGACCAGATTCACGCTGATGAAAGTTCCCGCAGGAGAAACTCAACTTTCTGGACTGCGTGTCCCTACTGTTACCGTTTGTATGAATACCCTAGGGTTTACGAGGGTAATTGTCTACGGTGCCAGAATTGCGATAGATCCTTCCACGGCGTGGCGGTTCCGACGCTGCCGCCGCTGGTCCCCGGCCAGGACGCGTATTATTGCTGCTGGGGCTTCTTCCCCATGGGGTTTGTAATGGGTAACTTCGGTTCACCGGAGAAAGAGGCGGCGGTGGAAGTGCCAGCACCGCAGCCCCCTCCTCCTCCGCCTCCATCTCAACCGGCTTCTTCTCTGCCGAATTGGATGCCCGTGCCGGCGAATAACGGTGCGCAGGCGACGCCGGTGCCGGCGAGGGTGACTAGGTCGGCGACGATGGTGGCCGCAAGAGCGACGAACGGGACTGGGCCGAAGAAGAGGGGGAGGCCGAGGAAGTATCCATTGCAGTCATGA 930 0.6086 MGSREFALLAQETEPLLEGSDQILAIVDVLLAADKRVNNHPDWYAILQVDRRSDDLDLIKKQYRRLALLLHPDKSRFAYADHAFKLVADAWALFADPVKKSVYDKELSFFSRVDLSVPGWVQQEKLSVRRPGPGPEPGPSTRNSASARDQIHADESSRRRNSTFWTACPYCYRLYEYPRVYEGNCLRCQNCDRSFHGVAVPTLPPLVPGQDAYYCCWGFFPMGFVMGNFGSPEKEAAVEVPAPQPPPPPPPSQPASSLPNWMPVPANNGAQATPVPARVTRSATMVAARATNGTGPKKRGRPRKYPLQS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01667 309 SUPERFAMILY Chaperone J-domain 34 107 IPR036869 -
Vimu1g01667 309 CDD DnaJ 42 91 IPR001623 -
Vimu1g01667 309 PRINTS DnaJ domain signature 63 78 IPR001623 -
Vimu1g01667 309 PRINTS DnaJ domain signature 79 99 IPR001623 -
Vimu1g01667 309 PRINTS DnaJ domain signature 44 62 IPR001623 -
Vimu1g01667 309 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 263 - -
Vimu1g01667 309 SUPERFAMILY FYVE/PHD zinc finger 161 216 IPR011011 -
Vimu1g01667 309 MobiDBLite consensus disorder prediction 126 155 - -
Vimu1g01667 309 Pfam DnaJ domain 42 104 IPR001623 -
Vimu1g01667 309 ProSiteProfiles dnaJ domain profile. 42 107 IPR001623 -
Vimu1g01667 309 Gene3D DnaJ domain 31 114 IPR036869 -
Vimu1g01667 309 MobiDBLite consensus disorder prediction 236 309 - -
Vimu1g01667 309 SMART dnaj_3 41 99 IPR001623 -
Vimu1g01667 309 MobiDBLite consensus disorder prediction 239 258 - -
Vimu1g01667 309 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01667 Vimu-Chr1 16728309 16729360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01667 2 307 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 45.897 4.75e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01667 - - gmx:100816918 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01667 1 16728309 16729360 Vimu1g01667 1 16728309 16729360 ECH
Vimu1g01667 1 16728309 16729360 Vimu10g02612 10 37513686 37515713 PCT