Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01660 ATGCTTCCCTTTCGGAGATTCTACGGCTTCCAGAGTTGGCTAGACCACGACTCTACCCACGTCCCCAACACTTTCATTAAACGGTCAGTGGAGTTCGACGGCGCCAGATCAAAAGCCGACCGCAAATCAACGGAAGCATGCAAGAGTCACAGGGAAGCCGAGAGGAGACGCAGGCAGAGAATCAACTCTCATCTATCCACCTTACGATCCCTCCTTCCTAACGCCGCCAAGTCCGATAAAGCATCGTTGCTGGCGGAAGTTGTTGAGCACGTGAAACGGTTAAAGAAGCAGGCCGATGAAGTGGCGTGCGGGGACGGCGGCGAACCGGGTGCGGTTCGGTCTGAGGCGTGGCCGCTTCCCGGGGAGTGCGACGAGGCGACGGTGAGTTGGTGCGAGGGGGAGGCGAATAGGGTGAAGGCGACGGTGTGCTGTGAGGACCGGGCCGGTCTGAACCGCGACGTGACACGGGCAATCCGGTCGGTTCAAGCAAAGCCGGTTCGCGCGGAAATGATGACGGTTGGGGGAAGGACGAAGAGTGTGGTGGTGGTGGAGTGGGGTGAAGAGGAGGTGGAGGTTGGGGCGCTGGAACGGGCTTTGAAGGCCGTGGTGGAAAATCGGGCTTTGGTGGGCTTTGGAATGGGCCCTGTTGTTTTGGGCCAGAAACGGGGTAGGGATTATTGCGGTTCCCCTACTTCTTCTTGCGAGGAATGGGAAACTCGGCTAGCCTAA 729 0.5871 MLPFRRFYGFQSWLDHDSTHVPNTFIKRSVEFDGARSKADRKSTEACKSHREAERRRRQRINSHLSTLRSLLPNAAKSDKASLLAEVVEHVKRLKKQADEVACGDGGEPGAVRSEAWPLPGECDEATVSWCEGEANRVKATVCCEDRAGLNRDVTRAIRSVQAKPVRAEMMTVGGRTKSVVVVEWGEEEVEVGALERALKAVVENRALVGFGMGPVVLGQKRGRDYCGSPTSSCEEWETRLA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01660 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 101 IPR036638 GO:0046983
Vimu1g01660 242 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Vimu1g01660 242 Gene3D - 135 208 - -
Vimu1g01660 242 Gene3D - 39 102 IPR036638 GO:0046983
Vimu1g01660 242 SMART finulus 51 100 IPR011598 GO:0046983
Vimu1g01660 242 SUPERFAMILY ACT-like 138 204 IPR045865 -
Vimu1g01660 242 PANTHER TRANSCRIPTION FACTOR BHLH30 29 224 IPR045847 GO:0003700|GO:0006355
Vimu1g01660 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01660 Vimu-Chr1 16511402 16512432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01660 29 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 40.094 1.21e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g01660 HLH 8.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01660 - - gmx:100816394 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01660 1 16511402 16512432 Vimu1g01660 1 16511402 16512432 ECH