Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01656 TCGCCCAAACATCTATCTCTGCTGTCTCATCTGTCACCGTGGGTCCCACTCTCTCCCACCACCTTCACCATTACTCTCTCTCTTTCTCTCTCTCTCTCCATAAAACCCTTGACACAACCCTTTTCTTCTCTGATCCAAAAATCCTTCTCCAACCTTCACCCTTCCCAGCTTCACACAGTGCAACCACAACGAAACACACGTGATGAGACAATAGCTTCAGGTTTTAAGCACATCAACATGTTCTCAAAACTTCATCCACAGCACCAACCGTTTCAGTTCTCTCGGGAATGTCAAACATCCGAGGAGGATGACAGCCGGAGTAACGGGGGACCCAACCTCGCGGCCCAGAAGCCCGTCTCCACAGGGGATGGAGCTACAATTGAAGTAGTGCGGCGGCCCAGGGGCCGCCCTCCGGGCTCCAAAAACAAGCCCAAGCCGCCTCTTATTATTACCCGCGAGCCAGACCCCTCCATGAGCCCCTTCATTTTAGAAATCCCCGGCGGAAACGACGTCGTGGATGCCCTAGCCCGGTTCAGCCGCAGAAAGAACACGAGCCTCTGTGTTCTCAACGGTTCGGGAACAGTCGGTAACGTCACTCTCCGCCAACCCTCCGTTGCTCCCGTCGGCACTGTTACCTTCCATGGCCGCTTCGACATCCTCTCCATGTCCGCCACCTTCCTCCTCCACGCACCCACGCCGCCGGCCCATCCCTCCACCTTCGCCGTCTCGCTCGCCGGACCGCAAGGGCAGATCGTCGGCGGACACGTCACTGGAAGGCTGCTCGCTGCTGGGACGGTGTTCATCATCGCCGCGTCGTTCAACAACCCCTCCTTCCACCGGCTCTCGTCAGGGGATGACGCGCATAATAACTCCGCGTCCGGCGGCGGTGTCGGCGATGCGCAGTCGCCGCCTGCCTCTGTTGGCGGCGCGGAGAGCGGACAACTTCCGGCGGAGTCGTGTATGTACAGCTGTCACCTCCCTTCGGATGTGATTTGGGCTCCCACGGCCAGAACACCTTTCTGA 1023 0.5846 SPKHLSLLSHLSPWVPLSPTTFTITLSLSLSLSIKPLTQPFSSLIQKSFSNLHPSQLHTVQPQRNTRDETIASGFKHINMFSKLHPQHQPFQFSRECQTSEEDDSRSNGGPNLAAQKPVSTGDGATIEVVRRPRGRPPGSKNKPKPPLIITREPDPSMSPFILEIPGGNDVVDALARFSRRKNTSLCVLNGSGTVGNVTLRQPSVAPVGTVTFHGRFDILSMSATFLLHAPTPPAHPSTFAVSLAGPQGQIVGGHVTGRLLAAGTVFIIAASFNNPSFHRLSSGDDAHNNSASGGGVGDAQSPPASVGGAESGQLPAESCMYSCHLPSDVIWAPTARTPF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01656 340 CDD DUF296 160 273 IPR005175 -
Vimu1g01656 340 MobiDBLite consensus disorder prediction 94 155 - -
Vimu1g01656 340 MobiDBLite consensus disorder prediction 282 297 - -
Vimu1g01656 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 275 IPR005175 -
Vimu1g01656 340 MobiDBLite consensus disorder prediction 282 312 - -
Vimu1g01656 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 99 309 IPR014476 GO:0003680
Vimu1g01656 340 ProSiteProfiles PPC domain profile profile. 155 294 IPR005175 -
Vimu1g01656 340 FunFam AT-hook motif nuclear-localized protein 159 293 - -
Vimu1g01656 340 Gene3D - 159 290 - -
Vimu1g01656 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01656 Vimu-Chr1 16324372 16325684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01656 121 339 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 61.905 1.38e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01656 - - gmx:100811053 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01656 1 16324372 16325684 Vimu1g01656 1 16324372 16325684 ECH
Vimu1g01656 1 16324372 16325684 Vimu10g01563 10 17533535 17534584 PCT