Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu1g01648 | ATGGCGGCTTCCGATGGAAGCGAATACTTCGAATTAGGATCACTCCATAGCGAGAGCTTCGCTATGGCCTCCAACTCCGAGACCGTGGCCGAGGATGAAGAGGAGCTGCAGTGGGCGGCGCTCTCCAGGTTGCCGTCGCAGAAGCGCATCAACTACGCACTCCTCCGCGCATCTTCTTCCCGTGCTCAACCTCCTACGCAAGACTTAGTTGACGTCCGAAAGCTTAGCCGCTCTCGCCGGGAACTCGTTGTTAAGAAAGCTCTGGCCACCACCGACCAAGACAACTACCGCCTTCTCTGCGCCATAAAAGAACGCTTCGACAGGGTTGGGTTGGCGGTGCCGAAGGTCGAGGTGAGATTCAGGAACCTGAACGTATCTGCCAATGTTCAAATCGGTTCTAGAGCTCTACCAACACTGATTAACTATACTCGTGATTGCTTCGAGTTATTAAACTTTTGTTTTAGACATCATGGAATCCCTAAAGTGTTAGTTAATTTGGATATAGTACGCAACGTGATGGTGGTCGTATCACGGATGATGACTCTGCTATTAGGACCTCCGGGAGCTGGGAAAACCAGTTTACTTCTCGCTCTCGCGGGCAAGCTTGATAACAACCTCAAGACAACGGGTAGTATAACATACAATGGCTGCGAGGTGGACGATTTTTATGTTCGACGGACTTCTGCATACATTAGCCAAACAGATGATCACGTTGCAGAACTGACGGTAAGAGAATGTTTGGATTTTGGTGCTAGATGTCAAGGTGCAGAAGAAGGTTTTGCAGCATATACAACTGAACTTGGCCGCCTAGAGAAGGAAAGGAACATAAGGCCTAGTTCAGAAGTTGACGCGTTTATGAAGGCATCATCTGTCGGAGGTAAGAAACACAGCGTGAATACGGATTACGTTTTGAAAGTGCTTGGTCTCGATGTATGTTCGGAGACAATAGTTGGCAACGATATGATGCGAGGGGTTTCTGGGGGCCAAAAGAAAAGAGTTACAACAGGAGAGATGATTGTTGGTCCAAGAAAAACACTATTTATGGATGAGATATCAACTGGTCTTGATAGCTCTACTACGTTCCAGATAGTAAAATGCATAAAGAACTTTGTTCATCAAATGGACGCTACAGTACTCATGGCTCTCCTTCAGCCAGCTCCTGAAACATTTGAGCTATTTGATGATCTGGTGCTTCTGTCAGAAGGGTACGTGGTATATCAAGGTCCTCGAGAAGACGTGCTCGACTTTTTTCAGTCATTAGGTTTTCAACTTCCACCTCGTAAGGGGATTGCTGACTTTCTACAGGAGGTGACATCTAAAAAGGATCAAGCACAATACTGGGCAGACCCTTCAAAACCATATGTGTTCGTCTCAGTTGCTGAAATTGCACAAGCCTTTAAAAATTCGAAATTTGGAAAGTATATGGAATCCTTGCAAAGTCATCCACTTGATACATCAAAAGGTCATCCTTCAGCTTTGGCTAGAACTAAATATGCCGTGCCAAGATGGGATCTTGCTAAAGCTTGTTTTTCTCGAGAACTCCTGCTGATAAAAAGGCATAGCTTTCTTTATATCTTTAGGACCTGCCAGGTTGCTTTTGTTGGATTTGTCACATGTACAGTATTCCTACGAACAAGGTTACATCCCACAGATGAGGTTTACGGACGCCTTTATCTTTCTGCTCTATTTTTTGGGATGGTTCACATGATGTTTAATGGCTTTTCTGAGCTACCACTCTTGATAAGTCGGCTTCCAGTATTTTATAAACAAAGAGATAATTTGTTCTATCCTGCATGGGCGTGGTCTGTTACCAGTTGGGTTCTACGTGTACCCTATTCCGTTGTTGAGTCTGTTATATGGACTGTTGTTGTATATTACAGTGTTGGATTTGCTCCATCAGCAGGAAGGTTTTTTCGCTACATGCTTTTACTTTTTTTAATGCATCAAATGGCATTAGGTCTCTTCCGTATGATGGCAGCTGTTGCTCGAGATATGGTTCTTGCCAACACATATGGATCAGCTTCACTACTTATTGTATTCTTACTCGGAGGATTTATTATACCTAAAGCAATGATTAAACCGTGGTGGATTTGGGGCTACTGGTTGTCCCCCCTTACCTATGGACAACGTGCTATTACAGTTAATGAATTTACTGCTACAAGATGGATGAAGAAATCCGAGAATGGGGGGAGCACAGTTGGTTACAATGTCCTAGTCTCACAGAGCCTACCAACTGCTGACTACTGGTACTGGATTGGTATTTCAGTTGTACTTGTGTATTCGCTTTTTTTCAACAACATGGTCACTGTGGCCTTGACCTTTCTGAATCCCCCACAAAAAGCACGAACAGTTATTCCAGGTGACGATGACTCGGAAAAGAAATCTTCAAGAGACGGCAGTAATCATGTCTATGAAATGAGTCCCCGCGCCAAATCAGCGAGAGAGGACAGTAATAAGAAAGGAATGATTCTTCCATTTCAACCACTGACAATGACATTCCATAATGTCAATTATTTTGTTGATATGCCAAAGGAGATAAGCAAGCAAGGAATACCTGAAACGCGGTTGCAGCTCTTGACAAACGTGAGTGGTGTTTTCTCACCCGGTGTACTTACAGCGTTAGTGGGCTCAAGTGGGGCTGGAAAGACCACTTTGATGGACGTACTGGCTGGTAGGAAAACTGGAGGCTACATAGAAGGGGAGATTAAAATTTCGGGTTACCCAAAAGAGCAACGAACATTTGCCAGAGTATCAGGATATGTTGAACAAAATGATATTCATTCTCCTCAAGTAACAATTGAGGAGTCACTATTGTTTTCTTCAGCTCTTCGCCTTCCCAAGGAAGTTGGAGTTGCTAAAAGACTTGAGTTTGTTGAACAAGTGATGAAACTAGTTGAGCTTGATGCTTTGAGAAATGCTTTGGTTGGTATGCCAGGTAGTTCTGGCTTATCAACTGAGCAGAGAAAGCGATTAACAATAGCAGTGGAGCTTGTGGCAAACCCTTCCATTATTTTTATGGATGAGCCTACTTCTGGACTTGATGCACGTGCAGCAGCTATTGTTATGCGAGCTGTTCGAAATACTGTTGATACTGGTAGAACTGTAGTTTGTACCATACATCAACCAAGTATTGATATATTTGAAGCATTTGATGATTTACTTCTTATGAAACGTGGCGGACGAGTAATATATGGGGGAAAGCTGGGTGTTCAGTCACAGATAATGATAGATTACTTTCAGGGAATAAGAGGAATTCCCCCCATTCCGAATGGGTACAATCCAGCCACCTGGGTGCTTGAGGTTACCACGCCTGCTACTGAAGAGAAACTTAATATAGATTTTGCAGAAGCTTACAAGAATTCGGATCAATACAGGGGGGTGGAGTCTTCTATCTTGCAATTTGGACATCCTCCTGCAGGATCTGAACCACTGAAATTTGATTCTATGTATTCGCTAAATCTGTTTTCCCAATTTTTACGATGCCTATGGAAACAAAATCTTGTATACTGGAGAAGTCCATCGTATAATGCGATGAGGTTATACTTCACCACAATAAGTGCTCTGATATTTGGTACCGTATTTTGGGATGTTGGCTCAAAAAGGGAATCAACTCAAGAGCTGTTCGTAGTTATGGGAGCTATGTATTCTGCATGCATGTTTCTTGGGGTAAATAACTCTTCTTCTGTACAGCCAATTGTTTCAATAGAAAGGACTGTCTTCTATAGAGAGAAAGCTGCTGGTATGTACTCTCCAATAGCTTATGCTGCAGCCCAGGGGCTAATAGAGGTACCATACATCGCTGTTCAGACTATAGTATTCGGTATAATCACATATTTCATGATCAATTTTGAAAGGACACCAGCAAAGTTTTTTCTCTATCTGGTGTTCATGTTCCTAACGTTCACCTACTTCACCTTTTACGGCATGATGGCCGTTGGTCTTACACCTTCCCAGCATCTAGCAGCTGTTATTTCTTCAGCATTTTACTCCCTGTGGAATCTTCTCTCAGGTTTTCTCATCCCAAAATCGAGTATTCCCGGGTGGTGGATTTGGTTCTATTATATCTGCCCGATTGCATGGACGTTACGTGGTGTTATAACGTCTCAGCTTGGTGATGTGGAAACCATTATAGTGGGACCTGGATTCCAGGGCAGCGTGAAAGAGTATTTAGCTGTTACTCTTGGATATGACTCTCAAATCAACGGATTTTCAGCAGTGGGCCTTTCCGCCATTGTGCTTATTGGATTTATCATTCTCTTCTTTGGTTCTTTCGCTGTATCAGTCAAAGTCTTGAATTTCCAGAAGAGATAA | 4311 | 0.4319 | MAASDGSEYFELGSLHSESFAMASNSETVAEDEEELQWAALSRLPSQKRINYALLRASSSRAQPPTQDLVDVRKLSRSRRELVVKKALATTDQDNYRLLCAIKERFDRVGLAVPKVEVRFRNLNVSANVQIGSRALPTLINYTRDCFELLNFCFRHHGIPKVLVNLDIVRNVMVVVSRMMTLLLGPPGAGKTSLLLALAGKLDNNLKTTGSITYNGCEVDDFYVRRTSAYISQTDDHVAELTVRECLDFGARCQGAEEGFAAYTTELGRLEKERNIRPSSEVDAFMKASSVGGKKHSVNTDYVLKVLGLDVCSETIVGNDMMRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCIKNFVHQMDATVLMALLQPAPETFELFDDLVLLSEGYVVYQGPREDVLDFFQSLGFQLPPRKGIADFLQEVTSKKDQAQYWADPSKPYVFVSVAEIAQAFKNSKFGKYMESLQSHPLDTSKGHPSALARTKYAVPRWDLAKACFSRELLLIKRHSFLYIFRTCQVAFVGFVTCTVFLRTRLHPTDEVYGRLYLSALFFGMVHMMFNGFSELPLLISRLPVFYKQRDNLFYPAWAWSVTSWVLRVPYSVVESVIWTVVVYYSVGFAPSAGRFFRYMLLLFLMHQMALGLFRMMAAVARDMVLANTYGSASLLIVFLLGGFIIPKAMIKPWWIWGYWLSPLTYGQRAITVNEFTATRWMKKSENGGSTVGYNVLVSQSLPTADYWYWIGISVVLVYSLFFNNMVTVALTFLNPPQKARTVIPGDDDSEKKSSRDGSNHVYEMSPRAKSAREDSNKKGMILPFQPLTMTFHNVNYFVDMPKEISKQGIPETRLQLLTNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGEIKISGYPKEQRTFARVSGYVEQNDIHSPQVTIEESLLFSSALRLPKEVGVAKRLEFVEQVMKLVELDALRNALVGMPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDDLLLMKRGGRVIYGGKLGVQSQIMIDYFQGIRGIPPIPNGYNPATWVLEVTTPATEEKLNIDFAEAYKNSDQYRGVESSILQFGHPPAGSEPLKFDSMYSLNLFSQFLRCLWKQNLVYWRSPSYNAMRLYFTTISALIFGTVFWDVGSKRESTQELFVVMGAMYSACMFLGVNNSSSVQPIVSIERTVFYREKAAGMYSPIAYAAAQGLIEVPYIAVQTIVFGIITYFMINFERTPAKFFLYLVFMFLTFTYFTFYGMMAVGLTPSQHLAAVISSAFYSLWNLLSGFLIPKSSIPGWWIWFYYICPIAWTLRGVITSQLGDVETIIVGPGFQGSVKEYLAVTLGYDSQINGFSAVGLSAIVLIGFIILFFGSFAVSVKVLNFQKR | 1436 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu1g01648 | 1436 | CDD | ABCG_PDR_domain2 | 828 | 1066 | IPR034003 | - | |
Vimu1g01648 | 1436 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 831 | 1083 | IPR003439 | GO:0005524 | |
Vimu1g01648 | 1436 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 856 | 1067 | IPR027417 | - | |
Vimu1g01648 | 1436 | Pfam | Plant PDR ABC transporter associated | 722 | 785 | IPR013581 | - | |
Vimu1g01648 | 1436 | SMART | AAA_5 | 177 | 402 | IPR003593 | GO:0016887 | |
Vimu1g01648 | 1436 | SMART | AAA_5 | 868 | 1060 | IPR003593 | GO:0016887 | |
Vimu1g01648 | 1436 | MobiDBLite | consensus disorder prediction | 783 | 817 | - | - | |
Vimu1g01648 | 1436 | FunFam | ABC transporter G family member 34 | 159 | 460 | - | - | |
Vimu1g01648 | 1436 | Pfam | ABC-2 type transporter | 507 | 717 | IPR013525 | GO:0016020|GO:0140359 | |
Vimu1g01648 | 1436 | Pfam | ABC-2 type transporter | 1157 | 1369 | IPR013525 | GO:0016020|GO:0140359 | |
Vimu1g01648 | 1436 | Pfam | ABC-transporter N-terminal | 83 | 141 | IPR029481 | - | |
Vimu1g01648 | 1436 | Pfam | ABC transporter | 180 | 351 | IPR003439 | GO:0005524 | |
Vimu1g01648 | 1436 | Pfam | ABC transporter | 859 | 1011 | IPR003439 | GO:0005524 | |
Vimu1g01648 | 1436 | MobiDBLite | consensus disorder prediction | 785 | 800 | - | - | |
Vimu1g01648 | 1436 | PANTHER | PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 | 22 | 1436 | - | - | |
Vimu1g01648 | 1436 | FunFam | ABC transporter G family member 40 | 845 | 1075 | - | - | |
Vimu1g01648 | 1436 | Gene3D | - | 844 | 1074 | IPR027417 | - | |
Vimu1g01648 | 1436 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 179 | 424 | IPR027417 | - | |
Vimu1g01648 | 1436 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 154 | 426 | IPR003439 | GO:0005524 | |
Vimu1g01648 | 1436 | Pfam | ABC-2 type transporter | 384 | 434 | IPR043926 | GO:0140359 | |
Vimu1g01648 | 1436 | Pfam | ABC-2 type transporter | 1040 | 1102 | IPR043926 | GO:0140359 | |
Vimu1g01648 | 1436 | Gene3D | - | 151 | 420 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu1g01648 | Vimu-Chr1 | 16107601 | 16120820 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu1g01648 | 856 | 1043 | Calmodulin-binding Proteins | AT2G36910 | 26.804 | 7.06e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu1g01648 | K08711 | - | gmx:100816324 | 2454.48 |