Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01648 ATGGCGGCTTCCGATGGAAGCGAATACTTCGAATTAGGATCACTCCATAGCGAGAGCTTCGCTATGGCCTCCAACTCCGAGACCGTGGCCGAGGATGAAGAGGAGCTGCAGTGGGCGGCGCTCTCCAGGTTGCCGTCGCAGAAGCGCATCAACTACGCACTCCTCCGCGCATCTTCTTCCCGTGCTCAACCTCCTACGCAAGACTTAGTTGACGTCCGAAAGCTTAGCCGCTCTCGCCGGGAACTCGTTGTTAAGAAAGCTCTGGCCACCACCGACCAAGACAACTACCGCCTTCTCTGCGCCATAAAAGAACGCTTCGACAGGGTTGGGTTGGCGGTGCCGAAGGTCGAGGTGAGATTCAGGAACCTGAACGTATCTGCCAATGTTCAAATCGGTTCTAGAGCTCTACCAACACTGATTAACTATACTCGTGATTGCTTCGAGTTATTAAACTTTTGTTTTAGACATCATGGAATCCCTAAAGTGTTAGTTAATTTGGATATAGTACGCAACGTGATGGTGGTCGTATCACGGATGATGACTCTGCTATTAGGACCTCCGGGAGCTGGGAAAACCAGTTTACTTCTCGCTCTCGCGGGCAAGCTTGATAACAACCTCAAGACAACGGGTAGTATAACATACAATGGCTGCGAGGTGGACGATTTTTATGTTCGACGGACTTCTGCATACATTAGCCAAACAGATGATCACGTTGCAGAACTGACGGTAAGAGAATGTTTGGATTTTGGTGCTAGATGTCAAGGTGCAGAAGAAGGTTTTGCAGCATATACAACTGAACTTGGCCGCCTAGAGAAGGAAAGGAACATAAGGCCTAGTTCAGAAGTTGACGCGTTTATGAAGGCATCATCTGTCGGAGGTAAGAAACACAGCGTGAATACGGATTACGTTTTGAAAGTGCTTGGTCTCGATGTATGTTCGGAGACAATAGTTGGCAACGATATGATGCGAGGGGTTTCTGGGGGCCAAAAGAAAAGAGTTACAACAGGAGAGATGATTGTTGGTCCAAGAAAAACACTATTTATGGATGAGATATCAACTGGTCTTGATAGCTCTACTACGTTCCAGATAGTAAAATGCATAAAGAACTTTGTTCATCAAATGGACGCTACAGTACTCATGGCTCTCCTTCAGCCAGCTCCTGAAACATTTGAGCTATTTGATGATCTGGTGCTTCTGTCAGAAGGGTACGTGGTATATCAAGGTCCTCGAGAAGACGTGCTCGACTTTTTTCAGTCATTAGGTTTTCAACTTCCACCTCGTAAGGGGATTGCTGACTTTCTACAGGAGGTGACATCTAAAAAGGATCAAGCACAATACTGGGCAGACCCTTCAAAACCATATGTGTTCGTCTCAGTTGCTGAAATTGCACAAGCCTTTAAAAATTCGAAATTTGGAAAGTATATGGAATCCTTGCAAAGTCATCCACTTGATACATCAAAAGGTCATCCTTCAGCTTTGGCTAGAACTAAATATGCCGTGCCAAGATGGGATCTTGCTAAAGCTTGTTTTTCTCGAGAACTCCTGCTGATAAAAAGGCATAGCTTTCTTTATATCTTTAGGACCTGCCAGGTTGCTTTTGTTGGATTTGTCACATGTACAGTATTCCTACGAACAAGGTTACATCCCACAGATGAGGTTTACGGACGCCTTTATCTTTCTGCTCTATTTTTTGGGATGGTTCACATGATGTTTAATGGCTTTTCTGAGCTACCACTCTTGATAAGTCGGCTTCCAGTATTTTATAAACAAAGAGATAATTTGTTCTATCCTGCATGGGCGTGGTCTGTTACCAGTTGGGTTCTACGTGTACCCTATTCCGTTGTTGAGTCTGTTATATGGACTGTTGTTGTATATTACAGTGTTGGATTTGCTCCATCAGCAGGAAGGTTTTTTCGCTACATGCTTTTACTTTTTTTAATGCATCAAATGGCATTAGGTCTCTTCCGTATGATGGCAGCTGTTGCTCGAGATATGGTTCTTGCCAACACATATGGATCAGCTTCACTACTTATTGTATTCTTACTCGGAGGATTTATTATACCTAAAGCAATGATTAAACCGTGGTGGATTTGGGGCTACTGGTTGTCCCCCCTTACCTATGGACAACGTGCTATTACAGTTAATGAATTTACTGCTACAAGATGGATGAAGAAATCCGAGAATGGGGGGAGCACAGTTGGTTACAATGTCCTAGTCTCACAGAGCCTACCAACTGCTGACTACTGGTACTGGATTGGTATTTCAGTTGTACTTGTGTATTCGCTTTTTTTCAACAACATGGTCACTGTGGCCTTGACCTTTCTGAATCCCCCACAAAAAGCACGAACAGTTATTCCAGGTGACGATGACTCGGAAAAGAAATCTTCAAGAGACGGCAGTAATCATGTCTATGAAATGAGTCCCCGCGCCAAATCAGCGAGAGAGGACAGTAATAAGAAAGGAATGATTCTTCCATTTCAACCACTGACAATGACATTCCATAATGTCAATTATTTTGTTGATATGCCAAAGGAGATAAGCAAGCAAGGAATACCTGAAACGCGGTTGCAGCTCTTGACAAACGTGAGTGGTGTTTTCTCACCCGGTGTACTTACAGCGTTAGTGGGCTCAAGTGGGGCTGGAAAGACCACTTTGATGGACGTACTGGCTGGTAGGAAAACTGGAGGCTACATAGAAGGGGAGATTAAAATTTCGGGTTACCCAAAAGAGCAACGAACATTTGCCAGAGTATCAGGATATGTTGAACAAAATGATATTCATTCTCCTCAAGTAACAATTGAGGAGTCACTATTGTTTTCTTCAGCTCTTCGCCTTCCCAAGGAAGTTGGAGTTGCTAAAAGACTTGAGTTTGTTGAACAAGTGATGAAACTAGTTGAGCTTGATGCTTTGAGAAATGCTTTGGTTGGTATGCCAGGTAGTTCTGGCTTATCAACTGAGCAGAGAAAGCGATTAACAATAGCAGTGGAGCTTGTGGCAAACCCTTCCATTATTTTTATGGATGAGCCTACTTCTGGACTTGATGCACGTGCAGCAGCTATTGTTATGCGAGCTGTTCGAAATACTGTTGATACTGGTAGAACTGTAGTTTGTACCATACATCAACCAAGTATTGATATATTTGAAGCATTTGATGATTTACTTCTTATGAAACGTGGCGGACGAGTAATATATGGGGGAAAGCTGGGTGTTCAGTCACAGATAATGATAGATTACTTTCAGGGAATAAGAGGAATTCCCCCCATTCCGAATGGGTACAATCCAGCCACCTGGGTGCTTGAGGTTACCACGCCTGCTACTGAAGAGAAACTTAATATAGATTTTGCAGAAGCTTACAAGAATTCGGATCAATACAGGGGGGTGGAGTCTTCTATCTTGCAATTTGGACATCCTCCTGCAGGATCTGAACCACTGAAATTTGATTCTATGTATTCGCTAAATCTGTTTTCCCAATTTTTACGATGCCTATGGAAACAAAATCTTGTATACTGGAGAAGTCCATCGTATAATGCGATGAGGTTATACTTCACCACAATAAGTGCTCTGATATTTGGTACCGTATTTTGGGATGTTGGCTCAAAAAGGGAATCAACTCAAGAGCTGTTCGTAGTTATGGGAGCTATGTATTCTGCATGCATGTTTCTTGGGGTAAATAACTCTTCTTCTGTACAGCCAATTGTTTCAATAGAAAGGACTGTCTTCTATAGAGAGAAAGCTGCTGGTATGTACTCTCCAATAGCTTATGCTGCAGCCCAGGGGCTAATAGAGGTACCATACATCGCTGTTCAGACTATAGTATTCGGTATAATCACATATTTCATGATCAATTTTGAAAGGACACCAGCAAAGTTTTTTCTCTATCTGGTGTTCATGTTCCTAACGTTCACCTACTTCACCTTTTACGGCATGATGGCCGTTGGTCTTACACCTTCCCAGCATCTAGCAGCTGTTATTTCTTCAGCATTTTACTCCCTGTGGAATCTTCTCTCAGGTTTTCTCATCCCAAAATCGAGTATTCCCGGGTGGTGGATTTGGTTCTATTATATCTGCCCGATTGCATGGACGTTACGTGGTGTTATAACGTCTCAGCTTGGTGATGTGGAAACCATTATAGTGGGACCTGGATTCCAGGGCAGCGTGAAAGAGTATTTAGCTGTTACTCTTGGATATGACTCTCAAATCAACGGATTTTCAGCAGTGGGCCTTTCCGCCATTGTGCTTATTGGATTTATCATTCTCTTCTTTGGTTCTTTCGCTGTATCAGTCAAAGTCTTGAATTTCCAGAAGAGATAA 4311 0.4319 MAASDGSEYFELGSLHSESFAMASNSETVAEDEEELQWAALSRLPSQKRINYALLRASSSRAQPPTQDLVDVRKLSRSRRELVVKKALATTDQDNYRLLCAIKERFDRVGLAVPKVEVRFRNLNVSANVQIGSRALPTLINYTRDCFELLNFCFRHHGIPKVLVNLDIVRNVMVVVSRMMTLLLGPPGAGKTSLLLALAGKLDNNLKTTGSITYNGCEVDDFYVRRTSAYISQTDDHVAELTVRECLDFGARCQGAEEGFAAYTTELGRLEKERNIRPSSEVDAFMKASSVGGKKHSVNTDYVLKVLGLDVCSETIVGNDMMRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCIKNFVHQMDATVLMALLQPAPETFELFDDLVLLSEGYVVYQGPREDVLDFFQSLGFQLPPRKGIADFLQEVTSKKDQAQYWADPSKPYVFVSVAEIAQAFKNSKFGKYMESLQSHPLDTSKGHPSALARTKYAVPRWDLAKACFSRELLLIKRHSFLYIFRTCQVAFVGFVTCTVFLRTRLHPTDEVYGRLYLSALFFGMVHMMFNGFSELPLLISRLPVFYKQRDNLFYPAWAWSVTSWVLRVPYSVVESVIWTVVVYYSVGFAPSAGRFFRYMLLLFLMHQMALGLFRMMAAVARDMVLANTYGSASLLIVFLLGGFIIPKAMIKPWWIWGYWLSPLTYGQRAITVNEFTATRWMKKSENGGSTVGYNVLVSQSLPTADYWYWIGISVVLVYSLFFNNMVTVALTFLNPPQKARTVIPGDDDSEKKSSRDGSNHVYEMSPRAKSAREDSNKKGMILPFQPLTMTFHNVNYFVDMPKEISKQGIPETRLQLLTNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGEIKISGYPKEQRTFARVSGYVEQNDIHSPQVTIEESLLFSSALRLPKEVGVAKRLEFVEQVMKLVELDALRNALVGMPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDDLLLMKRGGRVIYGGKLGVQSQIMIDYFQGIRGIPPIPNGYNPATWVLEVTTPATEEKLNIDFAEAYKNSDQYRGVESSILQFGHPPAGSEPLKFDSMYSLNLFSQFLRCLWKQNLVYWRSPSYNAMRLYFTTISALIFGTVFWDVGSKRESTQELFVVMGAMYSACMFLGVNNSSSVQPIVSIERTVFYREKAAGMYSPIAYAAAQGLIEVPYIAVQTIVFGIITYFMINFERTPAKFFLYLVFMFLTFTYFTFYGMMAVGLTPSQHLAAVISSAFYSLWNLLSGFLIPKSSIPGWWIWFYYICPIAWTLRGVITSQLGDVETIIVGPGFQGSVKEYLAVTLGYDSQINGFSAVGLSAIVLIGFIILFFGSFAVSVKVLNFQKR 1436
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01648 1436 CDD ABCG_PDR_domain2 828 1066 IPR034003 -
Vimu1g01648 1436 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 831 1083 IPR003439 GO:0005524
Vimu1g01648 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 856 1067 IPR027417 -
Vimu1g01648 1436 Pfam Plant PDR ABC transporter associated 722 785 IPR013581 -
Vimu1g01648 1436 SMART AAA_5 177 402 IPR003593 GO:0016887
Vimu1g01648 1436 SMART AAA_5 868 1060 IPR003593 GO:0016887
Vimu1g01648 1436 MobiDBLite consensus disorder prediction 783 817 - -
Vimu1g01648 1436 FunFam ABC transporter G family member 34 159 460 - -
Vimu1g01648 1436 Pfam ABC-2 type transporter 507 717 IPR013525 GO:0016020|GO:0140359
Vimu1g01648 1436 Pfam ABC-2 type transporter 1157 1369 IPR013525 GO:0016020|GO:0140359
Vimu1g01648 1436 Pfam ABC-transporter N-terminal 83 141 IPR029481 -
Vimu1g01648 1436 Pfam ABC transporter 180 351 IPR003439 GO:0005524
Vimu1g01648 1436 Pfam ABC transporter 859 1011 IPR003439 GO:0005524
Vimu1g01648 1436 MobiDBLite consensus disorder prediction 785 800 - -
Vimu1g01648 1436 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 22 1436 - -
Vimu1g01648 1436 FunFam ABC transporter G family member 40 845 1075 - -
Vimu1g01648 1436 Gene3D - 844 1074 IPR027417 -
Vimu1g01648 1436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 424 IPR027417 -
Vimu1g01648 1436 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 154 426 IPR003439 GO:0005524
Vimu1g01648 1436 Pfam ABC-2 type transporter 384 434 IPR043926 GO:0140359
Vimu1g01648 1436 Pfam ABC-2 type transporter 1040 1102 IPR043926 GO:0140359
Vimu1g01648 1436 Gene3D - 151 420 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu1g01648 Vimu-Chr1 16107601 16120820 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01648 856 1043 Calmodulin-binding Proteins AT2G36910 26.804 7.06e-06 48.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01648 K08711 - gmx:100816324 2454.48