Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01645 ATGAACCCTTTAACACTGGTGAAGCGCACTCAAAATATCAACGCCAGAGAAGCTGCACTCGGAATTGGCGAACAAGCTTCGTGGCACGCCAAGTACAAAGATTCCGCTTACGTATTCGTCGGTGGCATCCCCTTCGATCTCACCGAGGGTGACCTCCTCGCCGTTTTTGCTCAATATGGGGAGGTTGTTGATGTTAATCTCGTTAGAGACAAGGGCACCGGAAAATCAAAGGGTTTTGCGTTTCTTGCGTATGAGGATCAAAGGAGCACAAATCTTGCTGTGGATAATTTAAATGGGGCTCAGATTATGGGGAGAATTATTAGGGTGGACCATGTTGACAAGTACAAGAAGAAAGAGGAAGAAGACGAGGAGACAGAGCGGCAGAAGAGGGAGGCACGAGGCGTTTGTCGTGCGTTTCAAAGGGGTGATTGTACTCGTGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAAGAGCTGCAAATACCGGTTGGGGTCAGAAGGAAGACAATCCAAAGTGGGGTCACGACAAATTTGAGGGTCCCAAAAAAGAGAGGAGATCTGGCACCAATCAACCAAATCATAATTCAGAAAATAGAGACAGAGATTCACGTTCTAAAGCCCGTGCCAATGATGCTGGATTCGACAACCAACCTAAGAGAAGTGATAGAGAAGAGAGGTCAAGGCGGTGGCATGATGATGATGATACATATAAGGGAAGAGAAAATAATAATAGAAGAGAAGAGAAGGGATCAAGAAGGTATGGAGATGATGAATTTGAACATAAGTCGAGAGAAGAGCGATATAGGAGAGAAGAAAAGAAATCAAGAAAGGATGATTACGATGATATTCCTGAGCAAAAAGATCATCGTAGAAGGGAAGACAAGAGGGCAATAAAGCCAGATGATGGTGAGTATGAACCCAAGTTGAGAGATTCGGACATAAGGGAAGATAAAGGACCCAGGAGGAAGGATGAGGATGATTTTGTAAGCAAGGCAAGAGAACCTCATAGTAACAGGGAAGACAGAAGATCTCGAAAATACAGTGAAGATGAATCTGCACCAAGGTCAAGAGATTATGATAGGAAGCAAGATAGCAGGTTTTATAGAAGTGACAGTGATAGACCAGAGTCAAAGGTAAGACATGATTTTGAGAGGAGGGAAGAGAAAAGGTCAAGAAGGTAA 1182 0.4408 MNPLTLVKRTQNINAREAALGIGEQASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQIMGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGDCTRGASCKFSHDEQRAANTGWGQKEDNPKWGHDKFEGPKKERRSGTNQPNHNSENRDRDSRSKARANDAGFDNQPKRSDREERSRRWHDDDDTYKGRENNNRREEKGSRRYGDDEFEHKSREERYRREEKKSRKDDYDDIPEQKDHRRREDKRAIKPDDGEYEPKLRDSDIREDKGPRRKDEDDFVSKAREPHSNREDRRSRKYSEDESAPRSRDYDRKQDSRFYRSDSDRPESKVRHDFERREEKRSRR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01645 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Vimu1g01645 393 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Vimu1g01645 393 SMART rrm1_1 37 110 IPR000504 GO:0003723
Vimu1g01645 393 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Vimu1g01645 393 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 261 - -
Vimu1g01645 393 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Vimu1g01645 393 Coils Coil 115 135 - -
Vimu1g01645 393 Gene3D - 128 208 - -
Vimu1g01645 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Vimu1g01645 393 SUPERFAMILY RNA-binding domain, RBD 26 116 IPR035979 GO:0003676
Vimu1g01645 393 Gene3D - 8 127 IPR012677 -
Vimu1g01645 393 MobiDBLite consensus disorder prediction 154 393 - -
Vimu1g01645 393 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Vimu1g01645 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Vimu1g01645 393 MobiDBLite consensus disorder prediction 169 393 - -
Vimu1g01645 393 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
Vimu1g01645 393 FunFam Uncharacterized protein 127 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01645 Vimu-Chr1 15999263 16009637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01645 35 109 Eukaryotic Initiation Factors Gene Family AT2G36660 29.333 6.67e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01645 K13107 - gmx:100814734 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01645 1 15999263 16009637 Vimu1g01645 1 15999263 16009637 ECH