Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01636 ATGCAAATGGAGACCCTCTCTCTCTTCCTCACTCTAACAGCAACTCTCTCAGCTTATTTCCTCTGGTTTCTCCTCCTCGCCCGAACCCTAACCGGTCCAACACCCTTCCCCTTCCTCGGAAGCCTCCCCCAGCTTTTCCACAACCGCCACCGTGTCCACGACTGGATCGCCGCCAACCTACGCGCTGCTGGCTCCTCCGCCACCTACCAAACGTGTATAATCCCCTTCCCCTTCTTGGCACGTAGACAAGGTTTCTACACCGTGACATGCCACCCCAAGAACCTCGAGCACGTCCTCCGCACTCGCTTCGACAATTACCCAAAGGGCCCCAGGTGGCACGCCGCCTTCCACGACCTCCTCGGCCACGGCATCTTCAACAGCGACGGCGACACCTGGCTCATGCAGCGTAAAACCGCGGCTCTCGAGTTCACCACACGCACTCTGAAACATGCCATGTCTCGGTGGGTTAACCGCTCCATCAAGAACCGGTTGTGGTGCATCATGGACAAAGCTGAGAAAGATAGCGTCTCCGTGGACCTACAAGACCTTCTTCTGCGCTTGACCTTTGATAATATCTGTGGACTCACCTTCGGTAAAGACCCCGAAACTCTTTCGCCCGACCTTCCCGAAAACCCCTTCGCCGTTGCTTTTGACACCGCCACTGAAGCCACCATGCACAGGTTCCTCTACCCGGGTATAGTGTGGAGGTTCCAGAAGCTTCTGTGCATTGGATCCGAAAAGAGGTTAAAGGAGAGCCTCCGAGTGGTGGAAACCTACATGAACGACGCCGTTGCGGATCGCAGGGAAACTCCTTCCGACGACTTGCTCTCGCGTTTCATGAAGAAGCGTGACGCAGCCGGCAAGCCCTTCTCTTCCGCTGCGCTTCAACGCATCGTCCTTAACTTCGTCCTCGCGGGCAGGGACACCTCATCGGTTGCCCTCACCTGGTTCTTCTGGCTTCTCATGAACCACCCTCACGTGGAGGAAAGGCTCATGCAAGAGCTCACAACGGTTCTCTCCGGCACACGTGGTGGAGACCCCCGCCGGTGGACGGAGGACCCCCTTGACTTTGGTGAGGCGGATCGGCTGTTGTACCTAAAGGCGGCGCTGGCGGAGACGCTGCGTCTGTACCCGTCAGTGCCGCAGGACTTCAAGCAGGCCGTCGACGATGACGTGTTGCCGGACGGGACAGTGGTTCCGCGGGGTTCGACGGTGACGTACTCTATATACTCGGCTGGGAGGGTGGAGACGATTTGGGGCGAGGATTGCATGGACTTTAAACCAGAGAGGTGGCTTTCGGTTCGCGGGGAGCGATTCGAACCGCCAAAAGATGGGTTCAAGTTCGTGGCTTTCAACGCTGGACCGAGAACATGTTTGGGCAAGGACTTAGCATACCTCCAGATGAAATCAGTGGCCGCCGCTGTGCTCTTGCGTTACCGGCTATCGCTGGTTCCCGGTCACCGGGTGGAGCAGAAGATGTCACTCACTCTTTTCATGAAGAATGGGCTCAAGGTGTTCTTGCATCCACGTAAGCTCCAAGGTGGGTCAGGTGTTCCCACGTCATCATAA 1569 0.5711 MQMETLSLFLTLTATLSAYFLWFLLLARTLTGPTPFPFLGSLPQLFHNRHRVHDWIAANLRAAGSSATYQTCIIPFPFLARRQGFYTVTCHPKNLEHVLRTRFDNYPKGPRWHAAFHDLLGHGIFNSDGDTWLMQRKTAALEFTTRTLKHAMSRWVNRSIKNRLWCIMDKAEKDSVSVDLQDLLLRLTFDNICGLTFGKDPETLSPDLPENPFAVAFDTATEATMHRFLYPGIVWRFQKLLCIGSEKRLKESLRVVETYMNDAVADRRETPSDDLLSRFMKKRDAAGKPFSSAALQRIVLNFVLAGRDTSSVALTWFFWLLMNHPHVEERLMQELTTVLSGTRGGDPRRWTEDPLDFGEADRLLYLKAALAETLRLYPSVPQDFKQAVDDDVLPDGTVVPRGSTVTYSIYSAGRVETIWGEDCMDFKPERWLSVRGERFEPPKDGFKFVAFNAGPRTCLGKDLAYLQMKSVAAAVLLRYRLSLVPGHRVEQKMSLTLFMKNGLKVFLHPRKLQGGSGVPTSS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01636 522 Pfam Cytochrome P450 32 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 FunFam Cytochrome P450 25 513 - -
Vimu1g01636 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Vimu1g01636 522 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 Gene3D Cytochrome P450 26 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01636 522 PANTHER CYTOCHROME P450 25 505 - -
Vimu1g01636 522 CDD CYP86A 70 503 - -
Vimu1g01636 522 SUPERFAMILY Cytochrome P450 30 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01636 Vimu-Chr1 15810736 15813020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01636 3 510 Cytochrome P450 AT5G58860 73.529 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01636 K15401 - gmx:100788343 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01636 1 15810736 15813020 Vimu1g01636 1 15810736 15813020 ECH
Vimu2g02222 2 17283996 17286643 Vimu1g01636 1 15810736 15813020 PCT