LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01636	ATGCAAATGGAGACCCTCTCTCTCTTCCTCACTCTAACAGCAACTCTCTCAGCTTATTTCCTCTGGTTTCTCCTCCTCGCCCGAACCCTAACCGGTCCAACACCCTTCCCCTTCCTCGGAAGCCTCCCCCAGCTTTTCCACAACCGCCACCGTGTCCACGACTGGATCGCCGCCAACCTACGCGCTGCTGGCTCCTCCGCCACCTACCAAACGTGTATAATCCCCTTCCCCTTCTTGGCACGTAGACAAGGTTTCTACACCGTGACATGCCACCCCAAGAACCTCGAGCACGTCCTCCGCACTCGCTTCGACAATTACCCAAAGGGCCCCAGGTGGCACGCCGCCTTCCACGACCTCCTCGGCCACGGCATCTTCAACAGCGACGGCGACACCTGGCTCATGCAGCGTAAAACCGCGGCTCTCGAGTTCACCACACGCACTCTGAAACATGCCATGTCTCGGTGGGTTAACCGCTCCATCAAGAACCGGTTGTGGTGCATCATGGACAAAGCTGAGAAAGATAGCGTCTCCGTGGACCTACAAGACCTTCTTCTGCGCTTGACCTTTGATAATATCTGTGGACTCACCTTCGGTAAAGACCCCGAAACTCTTTCGCCCGACCTTCCCGAAAACCCCTTCGCCGTTGCTTTTGACACCGCCACTGAAGCCACCATGCACAGGTTCCTCTACCCGGGTATAGTGTGGAGGTTCCAGAAGCTTCTGTGCATTGGATCCGAAAAGAGGTTAAAGGAGAGCCTCCGAGTGGTGGAAACCTACATGAACGACGCCGTTGCGGATCGCAGGGAAACTCCTTCCGACGACTTGCTCTCGCGTTTCATGAAGAAGCGTGACGCAGCCGGCAAGCCCTTCTCTTCCGCTGCGCTTCAACGCATCGTCCTTAACTTCGTCCTCGCGGGCAGGGACACCTCATCGGTTGCCCTCACCTGGTTCTTCTGGCTTCTCATGAACCACCCTCACGTGGAGGAAAGGCTCATGCAAGAGCTCACAACGGTTCTCTCCGGCACACGTGGTGGAGACCCCCGCCGGTGGACGGAGGACCCCCTTGACTTTGGTGAGGCGGATCGGCTGTTGTACCTAAAGGCGGCGCTGGCGGAGACGCTGCGTCTGTACCCGTCAGTGCCGCAGGACTTCAAGCAGGCCGTCGACGATGACGTGTTGCCGGACGGGACAGTGGTTCCGCGGGGTTCGACGGTGACGTACTCTATATACTCGGCTGGGAGGGTGGAGACGATTTGGGGCGAGGATTGCATGGACTTTAAACCAGAGAGGTGGCTTTCGGTTCGCGGGGAGCGATTCGAACCGCCAAAAGATGGGTTCAAGTTCGTGGCTTTCAACGCTGGACCGAGAACATGTTTGGGCAAGGACTTAGCATACCTCCAGATGAAATCAGTGGCCGCCGCTGTGCTCTTGCGTTACCGGCTATCGCTGGTTCCCGGTCACCGGGTGGAGCAGAAGATGTCACTCACTCTTTTCATGAAGAATGGGCTCAAGGTGTTCTTGCATCCACGTAAGCTCCAAGGTGGGTCAGGTGTTCCCACGTCATCATAA	1569	0.5711	MQMETLSLFLTLTATLSAYFLWFLLLARTLTGPTPFPFLGSLPQLFHNRHRVHDWIAANLRAAGSSATYQTCIIPFPFLARRQGFYTVTCHPKNLEHVLRTRFDNYPKGPRWHAAFHDLLGHGIFNSDGDTWLMQRKTAALEFTTRTLKHAMSRWVNRSIKNRLWCIMDKAEKDSVSVDLQDLLLRLTFDNICGLTFGKDPETLSPDLPENPFAVAFDTATEATMHRFLYPGIVWRFQKLLCIGSEKRLKESLRVVETYMNDAVADRRETPSDDLLSRFMKKRDAAGKPFSSAALQRIVLNFVLAGRDTSSVALTWFFWLLMNHPHVEERLMQELTTVLSGTRGGDPRRWTEDPLDFGEADRLLYLKAALAETLRLYPSVPQDFKQAVDDDVLPDGTVVPRGSTVTYSIYSAGRVETIWGEDCMDFKPERWLSVRGERFEPPKDGFKFVAFNAGPRTCLGKDLAYLQMKSVAAAVLLRYRLSLVPGHRVEQKMSLTLFMKNGLKVFLHPRKLQGGSGVPTSS	522

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu1g01636	522	Pfam	Cytochrome P450	32	500	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu1g01636	522	FunFam	Cytochrome P450	25	513	-	-
Vimu1g01636	522	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	451	460	IPR017972	GO:0005506\|GO:0016705
Vimu1g01636	522	PRINTS	E-class P450 group I signature	294	311	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu1g01636	522	PRINTS	E-class P450 group I signature	458	481	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu1g01636	522	PRINTS	E-class P450 group I signature	314	340	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu1g01636	522	PRINTS	E-class P450 group I signature	367	385	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu1g01636	522	PRINTS	E-class P450 group I signature	448	458	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu1g01636	522	PRINTS	P450 superfamily signature	305	322	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Vimu1g01636	522	PRINTS	P450 superfamily signature	458	469	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01636	Vimu-Chr1	15810736	15813020	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01636	3	510	Cytochrome P450	AT5G58860	73.529	0.0	788

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01636	K15401		-	gmx:100788343	932.554

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu1g01636	1	15810736	15813020	Vimu1g01636	1	15810736	15813020	ECH
	Vimu2g02222	2	17283996	17286643	Vimu1g01636	1	15810736	15813020	PCT

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