Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01635 ATGGATATTGTGTTAAGAGGAGAAAGTCATGGTGAAAATGGCTTTCAAATTTATGGTTGTGATGTTATGAACCCTCCTTTGACATCCACAGACACAGATCAATTCTTATGTGGCCACTTTTTTCATCATCAACAACAACAGACAAAGAACAATGATGCTTGTGCTTTTTCTGAGTGGACAAACATCAACCAAAACCTTAAACTGTGTCTGGATGATATGCAAGTTTCATGTAAGAACACGAAAGTGGTGGGAAGGAGAAGGAAGAAACAATCTTCTGTGTCTTGGATCAAAGGGCAGTGGAATAAGGAAGAGGACAGGAAACTGATAAGGTTGGTGAAACAACATGGTGATAAAAAGTGGGCTGAAATAGCTGAGAAGTTGGAGGGAAGAGTTGGCAAACAATGCCGAGAAAGATGGAACAATCATTTGCGTCCTGATATTAAGAAAGATAGCTGGAGCGAAGAAGAAGAAAGAATACTGGTAGACATGCATGCTCGGCTTGGAAATCGTTGGTGCGAGATGGCAAAATGCCTTCCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCGACCAAAAGGAGACAGAATTCAAAGAGAAAGCACAAGAAAACAAAAACTTCTAATGGAAAACCTCATTCCTCCATACTCGAAGACTACATCAGAAGCAAGACCATCATCACCACAAATTCTACACCTCTTATTGCCCCAACACCCTCACACCACAACAATCCACCTAACCCTTTCAACCATCTCTTCTATCAACCTTTTCCTAACCAACCACTCTTCATGCAACAAATTTTCACCGACAATCTTCAACCCTCTAAGCCCTCTAATTTGGATCACTGGAACATTATCAATGTTGATGATGTTGATGACACTGAGGTTGTCTATTCTCTGCAATACCCACATAATATGCACTTCAATGATAGTTTCTTCCCCAGAGAGACCCATCCCCCATCTAATTACCTTCCTTCGGATTTTTATGTCTCTCCCTTGTTCAACGTAGCATCTGGGTTTGGAAATCAAGTTAAAGGAGAGTGGTAG 1050 0.4105 MDIVLRGESHGENGFQIYGCDVMNPPLTSTDTDQFLCGHFFHHQQQQTKNNDACAFSEWTNINQNLKLCLDDMQVSCKNTKVVGRRRKKQSSVSWIKGQWNKEEDRKLIRLVKQHGDKKWAEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVDMHARLGNRWCEMAKCLPGRSENAIKNHWNATKRRQNSKRKHKKTKTSNGKPHSSILEDYIRSKTIITTNSTPLIAPTPSHHNNPPNPFNHLFYQPFPNQPLFMQQIFTDNLQPSKPSNLDHWNIINVDDVDDTEVVYSLQYPHNMHFNDSFFPRETHPPSNYLPSDFYVSPLFNVASGFGNQVKGEW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01635 349 Pfam Myb-like DNA-binding domain 100 157 - -
Vimu1g01635 349 PANTHER MYB PROTEIN-RELATED 89 210 - -
Vimu1g01635 349 ProSiteProfiles Myb-like domain profile. 97 143 IPR001005 -
Vimu1g01635 349 Gene3D - 150 217 - -
Vimu1g01635 349 FunFam Transcriptional activator Myb isoform A 96 149 - -
Vimu1g01635 349 Gene3D - 96 148 - -
Vimu1g01635 349 SMART sant 96 145 IPR001005 -
Vimu1g01635 349 SMART sant 148 196 IPR001005 -
Vimu1g01635 349 CDD SANT 151 194 IPR001005 -
Vimu1g01635 349 MobiDBLite consensus disorder prediction 192 215 - -
Vimu1g01635 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 147 IPR017930 -
Vimu1g01635 349 MobiDBLite consensus disorder prediction 193 210 - -
Vimu1g01635 349 SUPERFAMILY Homeodomain-like 94 190 IPR009057 -
Vimu1g01635 349 CDD SANT 100 143 IPR001005 -
Vimu1g01635 349 ProSiteProfiles Myb-like domain profile. 144 194 IPR001005 -
Vimu1g01635 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 198 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01635 Vimu-Chr1 15806267 15809915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01635 88 336 MYB Transcription Factor Family AT5G11050 43.416 1.85e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu1g01635 Myb_DNA-bind_6 3.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01635 K09422 - vra:106763407 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02226 2 17342977 17345563 Vimu1g01635 1 15806267 15809915 PCT