Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01631 ATGAAGTGGGAAACTGTAGCCCTTTCTCCTACACCTTGTTCTCCAAACTCCAACACCAGTTGGTTGGTGGAAAATAACAGGAGCACGAAATGGACTCCTGAAGAGAACAAACTCTTTGAAAATGCTCTTGCAGTGCATGATACAGATACTCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCTGGAAAGACAGTACTTGATGTGATCAAGCAGTACAAAGAACTTGAAATTGATGTTAGCAATATAGAAGCTGGGTTAATCCCAGTTCCTGGTTATAGCACTGCCACTTCACCCTTCACCTTAGATTGGGTGAACACTCCTGGTTATGATGGATTTAAAGGAAGTGGAAAGAGATCATCCTCAGTGAGACCTCATGAGCAGGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACATAAATTGTTTTTACTGGGTCTGAAGAAATATGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTTTGTGATCTCTAGAACCCCAACACAAGTGGCTAGTCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATACATGACATAACAACAGTGAATCTGACAGAAACATCCACAACTTCTTCAGAAGACACCAACAGATCCACCTCACCACATGTGCTCTCACAGCAGCAGCAACAGCAGCCAAATTCTACTCCAACTACACCCACAACTCATTTTCAGTGGAGTAATCAGTCAAGCACAGGAATAGCTATGACTTTCAACCCTGCTCATGAAAGAGTCTTCATGTCTCCTTATGGTGCTAACTCCTTCGGGGTTAAAATGGAAGCACGGAATCTGCATAACGAATCTGCTTACTTGGGACCTCAGACACAGAACATGGTTTTCCAAATGCAACAGTCCTCACAACACTAG 921 0.4343 MKWETVALSPTPCSPNSNTSWLVENNRSTKWTPEENKLFENALAVHDTDTPDRWHKVAEMIPGKTVLDVIKQYKELEIDVSNIEAGLIPVPGYSTATSPFTLDWVNTPGYDGFKGSGKRSSSVRPHEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVISRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSTTSSEDTNRSTSPHVLSQQQQQQPNSTPTTPTTHFQWSNQSSTGIAMTFNPAHERVFMSPYGANSFGVKMEARNLHNESAYLGPQTQNMVFQMQQSSQH 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01631 306 SMART sant 27 79 IPR001005 -
Vimu1g01631 306 SMART sant 132 182 IPR001005 -
Vimu1g01631 306 CDD SANT 30 76 IPR001005 -
Vimu1g01631 306 FunFam transcription factor MYB1R1 134 185 - -
Vimu1g01631 306 Gene3D - 23 90 - -
Vimu1g01631 306 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Vimu1g01631 306 SUPERFAMILY Homeodomain-like 27 76 IPR009057 -
Vimu1g01631 306 MobiDBLite consensus disorder prediction 204 244 - -
Vimu1g01631 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 254 IPR043363 -
Vimu1g01631 306 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Vimu1g01631 306 MobiDBLite consensus disorder prediction 1 21 - -
Vimu1g01631 306 CDD SANT 135 180 IPR001005 -
Vimu1g01631 306 MobiDBLite consensus disorder prediction 120 134 - -
Vimu1g01631 306 Gene3D - 134 184 - -
Vimu1g01631 306 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Vimu1g01631 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Vimu1g01631 306 ProSiteProfiles SANT domain profile. 26 81 IPR017884 -
Vimu1g01631 306 FunFam Transcription factor SRM1 23 90 - -
Vimu1g01631 306 MobiDBLite consensus disorder prediction 115 134 - -
Vimu1g01631 306 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Vimu1g01631 306 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Vimu1g01631 306 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Vimu1g01631 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01631 Vimu-Chr1 15721478 15722732 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu1g01631 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01631 - - gmx:778034 513.842