Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01622 ATGAAGAAAACACCATCTCCCAAATTTCAGCAATCTAGCCAAAGGAAACAGAATCATAATCACCAAGTTCTTGCTACTGTCAATGATGAAGAGAGGCACAATCCTAAGACCGCTTCTGCACTCAAATCTTTCAAGAATGCTGTGAAGAAATGTGCACAGATTTTTTCATTGTTTCTCCTTGGCAAAAGAAAATCAGCCTCTTATGTTGTTGAAAATGATGACAGAAAATATACATCTAAGGTCAGAGGGGTGGCATCATCATCAACTGATTTATCTTCGGAGAGTAACACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTACGCCTCATCTAGCACTGCAAGTGGACAGCTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCACCAGATAATGAAATTGGACAAGGTGGCTTTGGAACTGTCTACAGGGGAAAACTAAATGATGGATCTATGGTTGCCGTAAAGCGTGCCAAAAAGGAAGTAATACACAGTCACTTACATGAGTTCAAGAATGAAATATACACCTTGTCTCAAATTGAGCATCGGAATCTGGTGAGGTTGTATGGATATTTGGAACATGGAAATGAGAAGATCATTGTTGTTGAATATGTTGGTAATGGCAACCTTCGAGAGCACCTTGATGGAATTCGGGGAGAAGGATTAGAAATGGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACGCAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAGTCACTGAGAACCTAAAGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTATCTGATGATCCTACAGCAACTCATATTTCAACTCAAGTAAAAGGAACAGCTGGTTACATGGATCCTGAGTATCTAAGAACATATCAACTCACTGAAAAAAGTGATGTTTATTCCTTTGGTGTTTTGCTTGTAGAAATGGTGACAGGAAGACATCCAATTGAACCAAAGAGACCCCTTGATGAAAGAGTGACAATCAGATGGGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTGCCATGGACCCTAGGCTGAGAAGAAATCCAGCCTCCATCAAGGCAGTAAAACAGGTTCTCAAGCTAGCTTTACAATGCCTTGCTCCTTTGAAACAATCACGGCCACCTATGAAGAACTGTGCAGAGGTTCTGTGGGAAATCCGCAAAAGTTTTAGAGATGAAACCGATTCTGATCATCCTTCTCTTCCTTCACACCATTCTGCAGATTTTCCTCAAAGGGAAAAGAATAAACATACAGTGTTTGGCATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCTAATCATATTCGTTCATAA 1395 0.3964 MKKTPSPKFQQSSQRKQNHNHQVLATVNDEERHNPKTASALKSFKNAVKKCAQIFSLFLLGKRKSASYVVENDDRKYTSKVRGVASSSTDLSSESNTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNEIGQGGFGTVYRGKLNDGSMVAVKRAKKEVIHSHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGNEKIIVVEYVGNGNLREHLDGIRGEGLEMGERLDIAIDVAHAITYLHMYADNPIIHRDIKASNILVTENLKAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMVTGRHPIEPKRPLDERVTIRWAMKMLKQGDAVFAMDPRLRRNPASIKAVKQVLKLALQCLAPLKQSRPPMKNCAEVLWEIRKSFRDETDSDHPSLPSHHSADFPQREKNKHTVFGIEDDDSYKFVSVPNHIRS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01622 464 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Vimu1g01622 464 Pfam Protein tyrosine and serine/threonine kinase 139 408 IPR001245 GO:0004672|GO:0006468
Vimu1g01622 464 CDD STKc_IRAK 142 411 - -
Vimu1g01622 464 MobiDBLite consensus disorder prediction 419 439 - -
Vimu1g01622 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Vimu1g01622 464 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 100 212 - -
Vimu1g01622 464 Gene3D Phosphorylase Kinase; domain 1 94 212 - -
Vimu1g01622 464 SUPERFAMILY Protein kinase-like (PK-like) 117 411 IPR011009 -
Vimu1g01622 464 MobiDBLite consensus disorder prediction 1 34 - -
Vimu1g01622 464 MobiDBLite consensus disorder prediction 1 24 - -
Vimu1g01622 464 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 213 422 - -
Vimu1g01622 464 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 110 425 - -
Vimu1g01622 464 Gene3D Transferase(Phosphotransferase) domain 1 213 430 - -
Vimu1g01622 464 ProSiteProfiles Protein kinase domain profile. 136 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01622 464 SMART serkin_6 136 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01622 Vimu-Chr1 15526208 15531689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01622 108 411 Receptor kinase-like Gene Family AT1G79620 44.695 1.13e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vimu1g01622 PK_Tyr_Ser-Thr 5.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01622 - - gmx:100811511 785.408