Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01620 ATGGGTTATTTATGTGATTTTTGTGGAGACCAGAGGTCATTGGTGTACTGTCGCAGTGATGCTGCATGCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTATCTAGGCGTCATTCGAGAACCCTTCTATGTGAGAGATGTAATTCACAACCTGCTTTCGTGAGGTGTGTTGAAGAGAAAATTTCGCTTTGTCAGAACTGTGATTGGTTGGCTCATGGTACCTCACCTACTTCTTCGACACACAAGAGGCAAACAATCAATTGCTACTCGGGCTGCCCTTCAGCTGCAGAGTTTTCTTCAATATGGTCCTTTTTCTTAGATATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTGGGTTTGATGAGCATTAATGAGAATGGCAACAAGAGTGATTTGGTTCCTCCAGAAGGGACAAATCTGTCTGGTTCATCTCAAGTGACAGATCTACCCACCAAGGGTAAATTTTGGGCTGGTACATCTTCAATACCCGTGTCAGACTCAGAACCTCGTATCCTGGACCAGCTACCTGAACCTGGGAATGAATGTATGCCCAAGTTGAACTGTCCTGGGAAAAAAGTTTCCGGAATATGCGAAGATGATAATCTATATGATGATTTCATCATGGATGAAGTGGATCTAGAACTTGAGAACTACCAGGAACTTTTTGGGATGGCTCTCAGTCATTCGGAAGAGCTTTTTGAAAATGGTGGATTTGAAAGCTTATTTGAGACAAAAGACATGTCTGCTAGTGCTGGTGAATCCCACTGTCAGGGTGCTGTTGCTGCTGAGGGATCATCTACTGGGCTGGTCAATGCTATCCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCAATGTTGAGTACAAAAACTGAGCCAATAGTTTGTTTTACGGGAAGGCAATCTCAATCAAACATTTCTTTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGACTGTGATGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCACTCTGCCAACCGAAGCAATGCTGTAATGCGCTATAAGGAAAAGAAGAAGACCCGGAACGCTGGTTGTTCAGTTTTGTTTGATGACCACATCAGGATTGTCTCCCTGAATGATGGCCAACTTTGCCAATCCCATCATCAGAAACCTCTGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAGGCGTGTGAAGGGCCGATTTGTTAAAGCCGGTGATGTCTATGACTATGACCCTTTGAGCCAAACCAGAAGCTACTGA 1326 0.4487 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLAHGTSPTSSTHKRQTINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENGNKSDLVPPEGTNLSGSSQVTDLPTKGKFWAGTSSIPVSDSEPRILDQLPEPGNECMPKLNCPGKKVSGICEDDNLYDDFIMDEVDLELENYQELFGMALSHSEELFENGGFESLFETKDMSASAGESHCQGAVAAEGSSTGLVNAIQPACSNAASADSMLSTKTEPIVCFTGRQSQSNISFSGVTKDSAGDYQDCDASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRNAGCSVLFDDHIRIVSLNDGQLCQSHHQKPLFEKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSQTRSY 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01620 441 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vimu1g01620 441 SMART bboxneu5 48 90 IPR000315 GO:0008270
Vimu1g01620 441 Pfam CCT motif 399 426 IPR010402 GO:0005515
Vimu1g01620 441 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Vimu1g01620 441 CDD Bbox1_BBX-like 47 90 - -
Vimu1g01620 441 ProSiteProfiles CCT domain profile. 384 426 IPR010402 GO:0005515
Vimu1g01620 441 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 428 - -
Vimu1g01620 441 CDD Bbox1_BBX-like 4 47 - -
Vimu1g01620 441 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01620 Vimu-Chr1 15503828 15512986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01620 1 441 C2C2-CO-like Transcription Factor Family AT3G07650 50.547 7.11e-141 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu1g01620 CCT 2.9e-10 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01620 - - gmx:100783016 729.169