Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01619 ATGGGCCTCTCAAGTCTTCCAGCACCATCTGAAGGAGTATTATGTGTCCTTCTGGTGAACACTGTATTGTCAATTTCCATATTCAAGGGCATTGTTAGGACAATCCTACACATTGTTGGAATCCATCTTTCATCATCGACCACTTCACCCTCTTCACCAGATCCCTACCAAGCGCCACCTGAGTCATTTGAATTCCATCTAAGTCCCTCTGAGAGTTACATTGAAGAGTTCAGAAGCCGGACACCAACACTCAGGTTTGACAGTGTGTGTTGCTGCAAACGACCTGAACATGACTGTTCTGTATGTCTCACTCAGTTCGAACCGGAATCTGAGATTAACCGTTTATCGTGCGGCCATCTCTTCCACAAAGCTTGCCTGGAGAAGTGGCTGGACTACTGGAACATTACATGCCCACTTTGCAGGACTCCCTTGATGCCTGAAGATGACACACCTTGCTTTCAGTAA 465 0.4645 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSTTSPSSPDPYQAPPESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKRPEHDCSVCLTQFEPESEINRLSCGHLFHKACLEKWLDYWNITCPLCRTPLMPEDDTPCFQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01619 154 SUPERFAMILY RING/U-box 98 147 - -
Vimu1g01619 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 149 IPR013083 -
Vimu1g01619 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Vimu1g01619 154 PANTHER - 1 148 IPR044249 -
Vimu1g01619 154 SMART ring_2 99 140 IPR001841 -
Vimu1g01619 154 Pfam Ring finger domain 98 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01619 Vimu-Chr1 15500280 15503290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01619 1 148 C3H Transcription Factor Family AT2G04240 64.935 1.18e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01619 K16285 - gmx:100786803 305.449