Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01608 ATGCATTTCATATTTGTTAGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGAAAAATAGCGGTATACGAGAGTTAGCTACAGCTGCAGTCTTGTCACTCTCGGCTGCTGCATCCAACAAGCCCATTATTGCTGCTTCTGGAGCCGCACCTTTCCTTGTCCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCACTCCATAATCTTTCTACCAGCAATGAGAATTCCATTGAACTTCTTGATCCAAGTGCTGTTTTCCCTCTAATCAACCTTCTCAAAGAATGCAAGAAGTATTCCAAGTTTGCGGAAAAAGCCACATCACTGCTTGAAATCCTTTCCAACTCTGAAGAAGGGCGAACTGCAATCTCAATTGCAGATGGTGGAATCTTAACCCTAGTTGAGACAGTTGAAGATGGATCACTTATCAGCACAGAACATGCTGTAGGAACTCTGCTATCTTTATGCCGAAGCTGCCGGGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCGATTCCTGGTCTGCTTCGTCTAACCGTGGAGGGCACGGCTGAAGCTCAAGATAGAGCTCGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAAAAGAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGAGTAGATGGAGCAGATAAAGCTGCTGAAACTGCGAAACAGTTGTTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGCACTCCTTCTATTCCTTCCACTTGA 843 0.4448 MHFIFVRNKVKIVTDGAMPPLVELLKMKNSGIRELATAAVLSLSAAASNKPIIAASGAAPFLVQILKSGSVQGKVDAVTALHNLSTSNENSIELLDPSAVFPLINLLKECKKYSKFAEKATSLLEILSNSEEGRTAISIADGGILTLVETVEDGSLISTEHAVGTLLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAETAKQLLQDMVQRSMEHSMKCIQHRAASCTPSIPST 280
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01608 280 Gene3D - 3 228 IPR011989 -
Vimu1g01608 280 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 16 58 IPR000225 GO:0005515
Vimu1g01608 280 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 98 142 IPR000225 GO:0005515
Vimu1g01608 280 SMART arm_5 46 86 IPR000225 GO:0005515
Vimu1g01608 280 SMART arm_5 5 45 IPR000225 GO:0005515
Vimu1g01608 280 SMART arm_5 130 171 IPR000225 GO:0005515
Vimu1g01608 280 SMART arm_5 87 129 IPR000225 GO:0005515
Vimu1g01608 280 Pfam Armadillo/beta-catenin-like repeat 7 44 IPR000225 GO:0005515
Vimu1g01608 280 PANTHER U BOX DOMAIN-CONTAINING 7 214 - -
Vimu1g01608 280 SUPERFAMILY ARM repeat 8 236 IPR016024 -
Vimu1g01608 280 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 57 99 IPR000225 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu1g01608 Vimu-Chr1 15310465 15311863 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01608 8 214 U-box Gene Family AT3G54790 40.385 6.54e-30 117
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01608 K08332 - gmx:100782472 483.796