Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu1g01608 | ATGCATTTCATATTTGTTAGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGAAAAATAGCGGTATACGAGAGTTAGCTACAGCTGCAGTCTTGTCACTCTCGGCTGCTGCATCCAACAAGCCCATTATTGCTGCTTCTGGAGCCGCACCTTTCCTTGTCCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCACTCCATAATCTTTCTACCAGCAATGAGAATTCCATTGAACTTCTTGATCCAAGTGCTGTTTTCCCTCTAATCAACCTTCTCAAAGAATGCAAGAAGTATTCCAAGTTTGCGGAAAAAGCCACATCACTGCTTGAAATCCTTTCCAACTCTGAAGAAGGGCGAACTGCAATCTCAATTGCAGATGGTGGAATCTTAACCCTAGTTGAGACAGTTGAAGATGGATCACTTATCAGCACAGAACATGCTGTAGGAACTCTGCTATCTTTATGCCGAAGCTGCCGGGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCGATTCCTGGTCTGCTTCGTCTAACCGTGGAGGGCACGGCTGAAGCTCAAGATAGAGCTCGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAAAAGAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGAGTAGATGGAGCAGATAAAGCTGCTGAAACTGCGAAACAGTTGTTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGCACTCCTTCTATTCCTTCCACTTGA | 843 | 0.4448 | MHFIFVRNKVKIVTDGAMPPLVELLKMKNSGIRELATAAVLSLSAAASNKPIIAASGAAPFLVQILKSGSVQGKVDAVTALHNLSTSNENSIELLDPSAVFPLINLLKECKKYSKFAEKATSLLEILSNSEEGRTAISIADGGILTLVETVEDGSLISTEHAVGTLLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAETAKQLLQDMVQRSMEHSMKCIQHRAASCTPSIPST | 280 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu1g01608 | 280 | Gene3D | - | 3 | 228 | IPR011989 | - | |
Vimu1g01608 | 280 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 16 | 58 | IPR000225 | GO:0005515 | |
Vimu1g01608 | 280 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 98 | 142 | IPR000225 | GO:0005515 | |
Vimu1g01608 | 280 | SMART | arm_5 | 46 | 86 | IPR000225 | GO:0005515 | |
Vimu1g01608 | 280 | SMART | arm_5 | 5 | 45 | IPR000225 | GO:0005515 | |
Vimu1g01608 | 280 | SMART | arm_5 | 130 | 171 | IPR000225 | GO:0005515 | |
Vimu1g01608 | 280 | SMART | arm_5 | 87 | 129 | IPR000225 | GO:0005515 | |
Vimu1g01608 | 280 | Pfam | Armadillo/beta-catenin-like repeat | 7 | 44 | IPR000225 | GO:0005515 | |
Vimu1g01608 | 280 | PANTHER | U BOX DOMAIN-CONTAINING | 7 | 214 | - | - | |
Vimu1g01608 | 280 | SUPERFAMILY | ARM repeat | 8 | 236 | IPR016024 | - | |
Vimu1g01608 | 280 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 57 | 99 | IPR000225 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu1g01608 | Vimu-Chr1 | 15310465 | 15311863 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu1g01608 | 8 | 214 | U-box Gene Family | AT3G54790 | 40.385 | 6.54e-30 | 117 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu1g01608 | K08332 | - | gmx:100782472 | 483.796 |