Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01596 ATGGGTGCCGTTGTCGAGTGTTACCCGCCGCCGCGTACGGCGGTGCTGTCTCTCAATACGCTGCCGCTGGGCTTCCGTTTCCGTCCCACCGATGAAGAGCTTATTGATTACTACCTGCGCTCGAAGATCAACGGAAACGGGGACGATGTCTGGGTTATCCGGGAGATTGATGTCTGCAAATGGGAGCCTTGGGACTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCCAACGGGCACAGGTTGAACCGAGCTACGAACCATGGGTATTGGAAAGCAACGGGGAAGGATCGAAAGATTAAGTCTGGTTCTACTTTGATCGGAATGAAAAAGACTCTTGTTTTCTATACTGGTCGTGCACCGAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACCCTGAAGGAGCTCGATGGTACCAATCCTGGACAGAATCCATACGTCCTTTGTCGGTTATTTAAGAAACATGATGAGAGTCTTGAAGGGTCAAATGGTGAGGATGTGGAGCGGACTGCATCAACCCCTATGACTGCCAATCACTCTCCAGATGAAATACAATCTGATTCATCTCTGGATCCAGCATCTTCCTCACAGATCACTGAGGGTGAAAAGCCGCTGACAGTTATCCATGAGAACTCTGAGGAAGCAATATCCAACATTATAACTGCAGTTGACTCCCATAGTGATGGATGTGATGCTCCTGCTGCACAAAATCAAATTATAAAACCAGCTGCAGAGCAGGATCAGCCATTTAACTTTGAGGATTTTTATGACCCAACAAACCAGCAATTAGATGACAAATTATTCTCCCCAGTCCATGCTCATTTCCCACCGGAAATTTACTATCAATCAGAACTTCAGTATGGTACAAATAACAATATGTCCGACTTTTTTGACTCGGTTAACTGGGACGCCATCTCCTATGATACTAGCAGTCTAGAGCTAGGCTCATCCTTCCTCAATGTCAGGGACAATGGATCTGGCAGTGATTCAGATGTGGAAATGACCAACATGACGAATCTGCAGGCATTACATGGTTATCCTAAGGAGGCAGTTGAGCAGAAGAGTAATGTAGGATTATTTCAGAACACTCCTCAGATGGCTTTCTCAAACGATGGTTCTATGGGTCAGGTAGATGATCCGATCAAGAATAGTGGGCAACTAAGAGACTTTGATACGTTTGTTAATGGTGATACTGGAATCAGAATAAGGACTCGTCAAGGACGAAATGAACAGCCAAACATGAATGGAATGGTACAATCACAAGGCAACGCACCAAGGAGAATACGATTACTTGTCGATCGACAGTTTGCTTCCGAGAAGGCGGCGAAAGATGGAAGTTGTGCTTCAGCCCCAGAAGACCATAATTCAAAAACCACCATTTCTAGGGAGTGGAATGCTTCGGAAAACCATGCTACCGATGAGAGTTCCGGCAGCTGTAATGATGTGGATGAAGCAGAGAAGGAATCTCCTGAGTCATCTGACGTGGGAAAGATTACTCGGCAGCATGTTGCAACTGCAGAATCCTTCATCTCAAAAGAGAGCAGAAGGGGTCATCACACTTCAAAGGTTTCGTCTAACCGTGGGATGTGGTCTTATGTTCTTGCAGTTTCTGCAACTGTGTTGGTTTCAGTAACAGTCATTGTTAATATATGGGCGTATGTGAGATCTTAA 1722 0.4599 MGAVVECYPPPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEGSNGEDVERTASTPMTANHSPDEIQSDSSLDPASSSQITEGEKPLTVIHENSEEAISNIITAVDSHSDGCDAPAAQNQIIKPAAEQDQPFNFEDFYDPTNQQLDDKLFSPVHAHFPPEIYYQSELQYGTNNNMSDFFDSVNWDAISYDTSSLELGSSFLNVRDNGSGSDSDVEMTNMTNLQALHGYPKEAVEQKSNVGLFQNTPQMAFSNDGSMGQVDDPIKNSGQLRDFDTFVNGDTGIRIRTRQGRNEQPNMNGMVQSQGNAPRRIRLLVDRQFASEKAAKDGSCASAPEDHNSKTTISREWNASENHATDESSGSCNDVDEAEKESPESSDVGKITRQHVATAESFISKESRRGHHTSKVSSNRGMWSYVLAVSATVLVSVTVIVNIWAYVRS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01596 573 MobiDBLite consensus disorder prediction 182 218 - -
Vimu1g01596 573 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Vimu1g01596 573 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Vimu1g01596 573 MobiDBLite consensus disorder prediction 468 495 - -
Vimu1g01596 573 FunFam Nac domain-containing protein 86 30 174 - -
Vimu1g01596 573 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Vimu1g01596 573 MobiDBLite consensus disorder prediction 497 512 - -
Vimu1g01596 573 MobiDBLite consensus disorder prediction 422 442 - -
Vimu1g01596 573 MobiDBLite consensus disorder prediction 175 218 - -
Vimu1g01596 573 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 253 - -
Vimu1g01596 573 MobiDBLite consensus disorder prediction 422 439 - -
Vimu1g01596 573 MobiDBLite consensus disorder prediction 457 517 - -
Vimu1g01596 573 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01596 Vimu-Chr1 15169654 15172805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01596 14 217 NAC Transcription Factor Family AT4G35580 66.667 4.71e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu1g01596 NAM 4.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01596 - - gmx:100778903 897.501