Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01587 ATGCCTATTCTAACATTTGGTCATTGTAAGCTGAGTGCTACCCTAGCTCTACGGTTATCACGAGATTGCATTAGAAGAATGGAGTTGATTACGAAACTTCAGTATTCTGTTGCTGATAGGACATTTAGTTCTGGTTCGGTGTATTCGCCGTCACAGGAATCGGAGTCTGGTAGAATGAATCGTCGGCAGGGAGGTTCCTCATCGATATATAGCCGTCCTAGTTTATCAGAAATGAAGAAAGAGAAGGCTGCACTAAGGTTAAAGGTTTATGAGTTCTTGAAGACAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGCATAGATTTTCTTCATAGTTTGGGGCTTACAATTGAAGACATCAACAATTATCCACTTGTTCTTGGCTGCAGCGTGAAGAAGAACATGATTCCTGTGCTTGACTATCTTGGTAAATTGGGAGTGAGGAAATCCTCCATTACGTTGTTCTTGCAGAGATATCCACAAGTTCTCCATGCTAGTGTTGTTGTGGATCTTATGCCTGTGGTTAATTATCTTAAGGGGATGGATATCAAGACTGAGGATATTCCTCGTGTTCTTGAGAGATACCCTGAAGTGCTTGGCTTCAAACTTGAGGGAACCATGAGCACATCAGTTGCTTATTTGATTGGAATTGGTGTAGGAAGAAGACAAATTGGAGGTGTCTTAACTAAATATCCAGAGATTTTGGGTATGCGTGTTGGTAGAATCATTAAGCCTTTTGTGGAATATCTGGAAAGTTTGGGGATTCGAAGGTTAGCCATTGCCAGATTGATAGAGCAACGACCTTATATTCTTGGATTTGGGCTGGATGAGAAGGTGAAACCAAATGTTAAATCCCTTGAAGATTTTAGTGTTAGACGAACATCACTTCCTTCTATAATTGCTCAGTATCCTGACATCATTGGAACTGACTTAAATTCAAAGCTTTCCAATCAGAGAATTATACTCAATTCGGTGCTTGAATTGGATACAGAGGACTTTGCCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAGCCTCATTAAGGGACCTATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGCTTTTCATTGCCTCAGATAAGGAAGATGATTGTTGCATGTCCTCAATTACTCGCGTTAAACATTGACATTATGAAACTTAGCTTTGATTACTTCCAAATGAAGATGAAAAGGCCTTTGGAAGATTTGGTTACATTCCCTGCATTCTTCACATATGCTTTGGAGTCAACTATAAAGCCTAGGCATGTGAGGGTTGCCAAGAAAGGGTTAAAGTGTTCTTTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAAATGGAAATGGAAATGGAATCATCATTTGACATGGATTCACTAACACAACCAAGGAGTGATGATGAGTCAGATTTTGACTATGAAGACAGTGACGAAGATGACGAGTAG 1521 0.4011 MPILTFGHCKLSATLALRLSRDCIRRMELITKLQYSVADRTFSSGSVYSPSQESESGRMNRRQGGSSSIYSRPSLSEMKKEKAALRLKVYEFLKTIGIVPDELDGLELPVTVDVMRERIDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSSITLFLQRYPQVLHASVVVDLMPVVNYLKGMDIKTEDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRQIGGVLTKYPEILGMRVGRIIKPFVEYLESLGIRRLAIARLIEQRPYILGFGLDEKVKPNVKSLEDFSVRRTSLPSIIAQYPDIIGTDLNSKLSNQRIILNSVLELDTEDFARVVEKMPQVVSLIKGPMLKHVDFLKDCGFSLPQIRKMIVACPQLLALNIDIMKLSFDYFQMKMKRPLEDLVTFPAFFTYALESTIKPRHVRVAKKGLKCSLSWMLNCSNEKFEQRMDYDTIDMEEMEMEMESSFDMDSLTQPRSDDESDFDYEDSDEDDE 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01587 506 Gene3D Transcription termination factor 3, mitochondrial 256 468 IPR038538 -
Vimu1g01587 506 Gene3D Transcription termination factor 3, mitochondrial 117 255 IPR038538 -
Vimu1g01587 506 PANTHER CGI-12 PROTEIN-RELATED 150 462 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 FunFam Transcription termination factor MTERF4, chloroplastic 253 467 - -
Vimu1g01587 506 FunFam Transcription termination factor mterf4, chloroplastic 115 252 - -
Vimu1g01587 506 Pfam mTERF 151 459 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 413 444 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 309 341 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 165 196 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 237 268 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 346 376 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 381 412 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 66 99 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 SMART mt_12 201 232 IPR003690 GO:0003690|GO:0006355
Vimu1g01587 506 MobiDBLite consensus disorder prediction 476 506 - -
Vimu1g01587 506 MobiDBLite consensus disorder prediction 43 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01587 Vimu-Chr1 15036756 15038276 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu1g01587 mTERF 5e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01587 K15031 - gmx:100785223 813.142