Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01578 ATGGCTTCTTCCTTATGCAACATCTTCCTCTTACTTTGTTTGCTTAATGTTCTTGCCTCCATAGGACCATATCCAGTTGCAGTTCATTCAGCTGGTGATGCTCCAATTAATGTGACAAAGCACTTTTCCTTCTACAATTTCAGCTTCAGCAACAACCCCAGACTAGTCCATGATTTGAAGCTTCTTGGCAGTGCTAAGTTCTCAGATGAAAAGGGTTCTCTTCAAATCCCAGATGAGTCACAATACGCAGACATAAGACACCAAGCTGGTAGAGGCATCTATTCCTTCCCAATTCGCCTGCTAGATCCAACCACAAAGACCCCAGCTTCCTTTCAAACAACTTTCTCTTTTCAACTCAACAATTCCACTGCCTCTGAGCAAGCTGCATATGGGGGTAGTGGCCTCACTTTCATCATTGTCCCTGATGAGTTCACTGTGGGAAGGCCCGGGCCATGGCTTGGCATGCTCAATGATGCTTGTGAAAATGACTACAAGGCAGTGGCCGTGGAGTTTGACACAAGAAAGAACCCAGAGTTTGGAGATCCTAATGACAACCATGTTGGCATCAACTTAGGTACCATAGTATCTACCAAAGTTATCAATGTTTCTGATGTTGGAGTTTCCCTTAAGGATGGTTTTGTTCACCGCGCTTGGATAACCTACGATGGTCCTCAGAGGAGAATGGACATTCGTCTTGGAAGGGCCAATGAAGAGGATTATCCTTCCACACCTATCTTCTCAGAATCTTTGGATCTCTCTCCTTATCTGAATGAGTACATGTTTGTGGGGTTCTCAGCTTCCACCGGTAACCATACACAAATCCACAACATACTCTCTTGGAACTTCACTTCTGTAAGCCAAGCTTTTCTGCGCTTCCCTTCATCTGAAACCTGCCAGGGTAAGATCTTACTTGAGAATAGTACAGCAGCACCAACTTCTGAGAAGTCTTCTAAGAATGAGCCACCAAGAAGCTTTTTGATTTTTATGGCTTCTGTGGCATTGGCTCTGGCTCTTTTCCTTGGTTTTTACTTCATCAGCAGGCACAGGAGAAATGCTTCCAAGATAAAGACTTCGGTGGAGACAGAGATTCACTTGCCAAGGCCTCCAAACAAACCACGCCGCTTCACATTTTCTCAACTTTCATCTTCAACTCGGTCATTCAGTGAGATAGAGTTGCTTGGCAGTGATTCTAGAGGAGAATACTACAGAGGAAAGCTTTCTAATGGAAGCCAGGTGGCTGTGAAAAGGTTCTCAACTCAGTTTCTCCACACACATGGATCAGACAAGAAGCGTTTGCTGAAGGAAATCAAAGTCATTGGCCATGTTCGCCACCCGAATTTGCTTCCTGTCAGAGGGTGGTGTCAAGACAACCATGAAATCATGGTGGTCTATGACTTTGTTCCCAATGGCAGCCTAGACAAATGGTTATTTGGCGCTGGTGTTCTTCCTTGGACTAGGAGATTCAAAGTTATTAAGGATGTAGCTGATGGCTTGAGCTTCCTCCACACTAAGCAACTAGCCCACAAGAACTTGAAATGCAGCAGTGTGTTTCTAGATGTTAACTTCAGAGCTGTTTTGGGTGATTTTGGGTTTGTGCTGTTGGGGGCAGAATCAAAACAGTTTGAGTCAGCAGTGTGCCATGGTGCAGACGTGTTTGAGTTTGGTGTCCTTGTGTTGGAAGTGATAGCTGGAAGGGTAAGGGATGAGAAAGAGGAGGGAAATCCAGAAGAGAGGAACCTATTGGATTATGCTTGGAACTTGCATCAGATTGATGAGAAAGTTAAGCTGGTGGACAGAAGGATGGGATCATTGATCAACTTGGAGCAGGCAATTCGTGTTCTCGAAATTGGGTTGCTTTGCACCTTAAATGAGAACAAAGGAAGACCCTCAATGGAGCAAGTGGTGGAGTTTTTTCTGAACATGGATAAGCCCATTCCTGAACTGCCAAGAACTCGCCCTGTTTCCTTGTTCCCCTATAATAGCGCCAATACAGGACTTTGCAATACATATTCTTGCACTTTTTAG 2025 0.4464 MASSLCNIFLLLCLLNVLASIGPYPVAVHSAGDAPINVTKHFSFYNFSFSNNPRLVHDLKLLGSAKFSDEKGSLQIPDESQYADIRHQAGRGIYSFPIRLLDPTTKTPASFQTTFSFQLNNSTASEQAAYGGSGLTFIIVPDEFTVGRPGPWLGMLNDACENDYKAVAVEFDTRKNPEFGDPNDNHVGINLGTIVSTKVINVSDVGVSLKDGFVHRAWITYDGPQRRMDIRLGRANEEDYPSTPIFSESLDLSPYLNEYMFVGFSASTGNHTQIHNILSWNFTSVSQAFLRFPSSETCQGKILLENSTAAPTSEKSSKNEPPRSFLIFMASVALALALFLGFYFISRHRRNASKIKTSVETEIHLPRPPNKPRRFTFSQLSSSTRSFSEIELLGSDSRGEYYRGKLSNGSQVAVKRFSTQFLHTHGSDKKRLLKEIKVIGHVRHPNLLPVRGWCQDNHEIMVVYDFVPNGSLDKWLFGAGVLPWTRRFKVIKDVADGLSFLHTKQLAHKNLKCSSVFLDVNFRAVLGDFGFVLLGAESKQFESAVCHGADVFEFGVLVLEVIAGRVRDEKEEGNPEERNLLDYAWNLHQIDEKVKLVDRRMGSLINLEQAIRVLEIGLLCTLNENKGRPSMEQVVEFFLNMDKPIPELPRTRPVSLFPYNSANTGLCNTYSCTF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01578 674 ProSiteProfiles Protein kinase domain profile. 387 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01578 674 SUPERFAMILY Protein kinase-like (PK-like) 369 656 IPR011009 -
Vimu1g01578 674 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 349 466 - -
Vimu1g01578 674 Pfam Legume lectin domain 41 287 IPR001220 GO:0030246
Vimu1g01578 674 SUPERFAMILY Concanavalin A-like lectins/glucanases 43 284 IPR013320 -
Vimu1g01578 674 Pfam Protein tyrosine and serine/threonine kinase 391 532 IPR001245 GO:0004672|GO:0006468
Vimu1g01578 674 CDD lectin_legume_LecRK_Arcelin_ConA 41 284 IPR001220 GO:0030246
Vimu1g01578 674 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 39 292 - -
Vimu1g01578 674 PANTHER - 78 640 - -
Vimu1g01578 674 FunFam Lectin-domain containing receptor kinase A4.2 467 646 - -
Vimu1g01578 674 Gene3D Transferase(Phosphotransferase) domain 1 546 645 - -
Vimu1g01578 674 Gene3D Transferase(Phosphotransferase) domain 1 467 545 - -
Vimu1g01578 674 Gene3D - 39 291 - -
Vimu1g01578 674 ProSitePatterns Legume lectins beta-chain signature. 167 173 IPR019825 -
Vimu1g01578 674 Gene3D Phosphorylase Kinase; domain 1 346 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01578 Vimu-Chr1 14906220 14908244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01578 46 657 Receptor kinase-like Gene Family AT5G55830 31.240 6.69e-95 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu1g01578 Lectin_legB 1.5e-56 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01578 - - gmx:100781464 1199.11