Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01553 ATGGTGTTTTATTTAGGACCTGCTAGGTGTTATAGGCAAATTAAAAACAAGCCATACCCCAAGTCCCGTTTCTGTCGTGGTGTTCCGGATCCCAAGATCAGAATTTATGATGTTGGCATGAAGAAGAAAGGTGTGGATGAGTTTCCTTTCTGTGTCCATCTGGTAAGTTGGGAGAAGGAAAATGTGTCGAGTGAGGCATTGGAAGCTGCCCGCATTGCTTGCAACAAGTACATGGCAAAGTTTGCTGGAAAGGATGCTTTCCACTTGAGGGTCCGAGTGCACCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACTGGAATGAGAGGTGCTTTTGGAAAGCCACAGGGTACTTGTGCTAGAGTGGCTATCGGGCAGGTCCTCCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCTCTTCGCCGTGCCAAGTTCAAATTCCCTGGTCGTCAAAAGATTATTGTTAGCAGGAAATGGGGCTTCACCAAGTTTAGCCGTTCTGATTATATCAGGTTTAAGTCAGAGAACAGAATTGTGCCAGATGGTGTTAATGCAAAGCTTCTTGGATGCCATGGACCATTGGCCAACCGCCAACCTGGAAGAGCTTTTCTGAACAGTGCTACTGCTTAA 672 0.4702 MVFYLGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYIRFKSENRIVPDGVNAKLLGCHGPLANRQPGRAFLNSATA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01553 223 CDD Ribosomal_L16_L10e 43 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vimu1g01553 223 NCBIfam 50S ribosomal protein L16 7 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vimu1g01553 223 SUPERFAMILY Ribosomal protein L16p/L10e 7 175 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vimu1g01553 223 Pfam Ribosomal protein L16p/L10e 14 168 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vimu1g01553 223 PANTHER 60S RIBOSOMAL PROTEIN L10 7 215 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vimu1g01553 223 Gene3D Ribosomal protein L10e/L16 5 219 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vimu1g01553 223 FunFam 60S ribosomal protein L10 5 208 - -
Vimu1g01553 223 ProSitePatterns Ribosomal protein L10e signature. 110 131 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01553 Vimu-Chr1 14481462 14482420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01553 7 222 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.648 6.21e-141 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01553 K02866 - gmx:100305619 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01553 1 14481462 14482420 Vimu10g01546 10 17190119 17191404 PCT