Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01552 ATGAAGTTCCAATTCCGTGCTGTTTCATTTGTTATGCTAAGCTTCATAGTGTCTCTCTTTGGCCTGATTGTAGCTGACTTGAACTCCGACAGACAAGCTCTGCTTGAGTTCTTCTCAAATGTTCCACACTCCCCAAGGTTAAATTGGAGTGAGTCCACTCCAATTTGTACTTCTTGGGCTGGTGTGACTTGCAACCAAAATGAAACTAGTGTCATTAGCATCCATCTTCCAGGGGCAGGTTTCCAGGGCTCCATTCCAGAGAATAGCCTGGGTAAACTAGATTCTCTTAAAATTCTGAGCCTTCATTTCAATGGCCTCAGAGGAAACCTTCCTTCTGACATTCTCTCTATTCCTTCACTCCAATATGTAAACCTGCAGCAAAATAACTTCTCAGGTCTAATCCCTTCTTCCCTCTCCCCTAAACTCATAGCATTAGACATTTCCTCTAATAATTTCTCGGGAAATATCCCACCTATCTTTCAGAATCTCAGTAGACTAACCTGGTTGTATCTCCAAAACAATTCCCTCTCTGGGGCTATTCCTGACTTCAACTTTACAAGTCTCAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCAAAGTCCATCAACAAGTATCCCTACACTTCTTTTGCTGGGAACTCTCACTTGTGTGGACCACCTCTCAATAACTGTTCTGCAGTCTCCACTCCATCTTCATTTTCTTCCTCCATTTCTCCTTCTCCTGTTCATCAACCACTCTCTCCAGAAGCAGCTCCCCAAAATAGAAGTGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTTCTATACTTGCTCTGGCAATTGGGGGCTGTGCTTTCCTCTCTCTCCTGGTTTTGGTGATGTTTGTATGCTGTTTAAAGAACAAAAGTCAAAGCAGTGGCATACTTACAGGAAAGGCACCGTGTTCTGGAAAGACTGAGGTTTCAAAGAGTTTCGGGAGTGGGGTGCAAGAGGTTGAAAAAAACAGGTTGTTTTTCTTTGAAGGTTGCTCTTACAGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATATAGGGCTGTTTTGGAGGATGGAACAGCAGTGGTAGTTAAAAGGTTGAGGGAAGTTCTAGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAGGTTGTAGGAAGAATTGGTCGGCACCCCAATGTTTTGCCCCTTCGAGCCTTTTACTTCTCCAAAGATGAGAAACTTCTAGTATATGACTACATGCCTGGAGGCAGCTTGTTTTCCTTGTTGCATGGGAACAGAGGAATGGGAAGAGCTCCATTAGACTGGGATTCAAGAATGAAGATTGCACTTGGAGTTGCAAAGGGGATTGCTTCCATTCACACTGACCACATGGATTCAAAATTTACTCATGGCAACATCAAGTCCTCCAATGTGCTCATAACCCAAGAACATGATGGCTGCATCACTGATGTAGGACTCACTCCTATGATGACCTCCCAATCAACCATGTCAAAAGCCAATGGCTACCGTGCTCCCGAAGTAACCGAGTACAGGAGAATCACTCAGAAGTCTGATATTTATAGCTTTGGAGTGCTCCTTCTTGAAATCCTCACTGGCAAGGCTCCAATAGGATATCCTGGCTATGAGGACATGGTTGATCTTCCAAGATGGGTGAGGTCTGTGGTTAGAGAGGAATGGACTGCTGAAGTTTTTGATGAGGAGCTGCTTAGAGGGCAGTATTTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCATTGGCATGTGTGGCTAAGGTGGCAGATAATAGGCCAACAATGGATGAAACTGTTAGGAACATAGAGGAAATTAGGCTTCCTGAATTGAATAACCATAACACGTCATCTGAGTCTGACTCTAATCTACAAACTCCATAA 1935 0.4351 MKFQFRAVSFVMLSFIVSLFGLIVADLNSDRQALLEFFSNVPHSPRLNWSESTPICTSWAGVTCNQNETSVISIHLPGAGFQGSIPENSLGKLDSLKILSLHFNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSSLSPKLIALDISSNNFSGNIPPIFQNLSRLTWLYLQNNSLSGAIPDFNFTSLKYLNLSYNNLNGSIPKSINKYPYTSFAGNSHLCGPPLNNCSAVSTPSSFSSSISPSPVHQPLSPEAAPQNRSATTSKSYFGLASILALAIGGCAFLSLLVLVMFVCCLKNKSQSSGILTGKAPCSGKTEVSKSFGSGVQEVEKNRLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAVLEDGTAVVVKRLREVLVGKKEFEQQMEVVGRIGRHPNVLPLRAFYFSKDEKLLVYDYMPGGSLFSLLHGNRGMGRAPLDWDSRMKIALGVAKGIASIHTDHMDSKFTHGNIKSSNVLITQEHDGCITDVGLTPMMTSQSTMSKANGYRAPEVTEYRRITQKSDIYSFGVLLLEILTGKAPIGYPGYEDMVDLPRWVRSVVREEWTAEVFDEELLRGQYFEEEMVQMLQIALACVAKVADNRPTMDETVRNIEEIRLPELNNHNTSSESDSNLQTP 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01552 644 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Vimu1g01552 644 Gene3D Ribonuclease Inhibitor 141 230 IPR032675 -
Vimu1g01552 644 ProSiteProfiles Protein kinase domain profile. 351 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01552 644 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Vimu1g01552 644 SUPERFAMILY Protein kinase-like (PK-like) 355 619 IPR011009 -
Vimu1g01552 644 ProSitePatterns Protein kinases ATP-binding region signature. 357 388 IPR017441 GO:0005524
Vimu1g01552 644 Gene3D Phosphorylase Kinase; domain 1 317 426 - -
Vimu1g01552 644 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Vimu1g01552 644 FunFam Leucine-rich repeat receptor-like kinase 30 141 - -
Vimu1g01552 644 PANTHER OS05G0588300 PROTEIN 12 631 - -
Vimu1g01552 644 Pfam Protein kinase domain 355 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01552 644 FunFam pollen receptor-like kinase 1 319 426 - -
Vimu1g01552 644 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Vimu1g01552 644 FunFam Leucine-rich repeat receptor-like protein kinase 142 228 - -
Vimu1g01552 644 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 427 634 - -
Vimu1g01552 644 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
Vimu1g01552 644 SUPERFAMILY L domain-like 40 225 - -
Vimu1g01552 644 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01552 Vimu-Chr1 14472692 14475088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01552 5 642 Receptor kinase-like Gene Family AT5G58300 55.590 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu1g01552 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01552 - - vum:124839146 1225.31