Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01551 ATGGGGTTCTTCACGGATGCATATGATCTCTTTTGCATCACTGCACTTATCAAGCTCATAGGTCGCCTGTACTACTATGACCCCATGAGAAACAGTCCAGGGAAGCTTCCAAAGCATGTAAGCAATGCAATAGCTGGAGTTGCATTGTGTGGCACCCTTTCGGGGCAGCTCTTCTTTGGCTGGCTGGGTGACAAACTCGGCCGAAAAAAGGTTTATGGCATCACCCTTTCCACCATGGTGGGGTGTGCCTTGGCATCAGGGCTTTCTTTTGGCTCCACAGCCAAAAGTGTGGTTGCTAGTCTTTGCTTCTTCAGGTTTTGGCTAGGATTTGGCATAGGAGGAGACTATCCTCTCTCAGCTGTTATAATGTCTGAATATGCCAATCAGAAGACTAGGGGAGCTTTTGTTGCTGCTGTTTTTGCTATGCAAGGAGTGGGAATATTGTTTGCTGGAGGTGTATCCATGTTGGTCTCCAAACTGTTCCTATTAGCTTATCCAGCCAGCGAAGGAGACTTTGTTTGGAGAATAGTGCTAATGTTTGGTGCATTTCCTGCTGCCTTCACTTATTACTGGAGAATGAAAATGCCAGAAACTGCAAGGTACACTGCCTTAGTGGAAGGAAATCACAAGAAAGCGGTTGAAGATATGTCTAAAGTTCTTGAAAACGATATACCTTTAGAAGAATCAAATACCAGGGTTGCTGCCACACCTAGCCTCTCTTATGGATTCTTCTCTTCAAAGTTTCTTGAGAAGCACGGCCTTCACCTTCTAGGAACAACCAGCACCTGGTTCTTCTTGGATATTGCCTTGTACAGTCTTCAGCTAGCACAAAAAGATATTTACCATGCAAGTGGATTTTTACCCAGTGCTTCCCAAATGAATGCCATAGAGGAGGTGTTTTTACTCTCCAAAGCAATGTTTGCAGTGGCACTGTTTGCCACTGTTCCTGGATACTGGTGCACAGTGTACTTCATTGACAAGATTGGAAGGTACAAAATCCAACTTGGCGGATTTTTTGCTATGTCTGTTTGCATGTTGTTTTTGGGACTCAATTATCCAGAATATAGGGGAGATAAATGCAACCCAGATGAAACATATGTCATTCTTTTCGAAGTCACCCTTTTCTTTGCAAACTTTGGACCCAATAGCACAACATTTATAGTGCCAGCAGAGCTGTTCCCTGCTAGGTTCCGTTCAACATGCCATGGGATATCAGCTGCAGCTGGTAAAGCAGGAGCTATCATTGGTGCTTTTGTTGTACAAAGCTATACAAGTAATCCGCAAGACGAATCACAAGGTATCAAGACTGCACTTATGGCACTTTCAGTTGTCAATATGCTAGGATTCCTCTGCACTTTCTTAGTGCCAGAAACACGAGACCGTTCACTTGAAGAAATCTCTGGAGAAGATAAAGAACTCACTGGCAATATTGCTCAAGACAATGCAAACGATAAAACAACTGATACAGAAAAGGAAACCAAAAACTCTAACGCTGATATAAGTCCAGCAAACTCAGTGGTTTAG 1524 0.435 MGFFTDAYDLFCITALIKLIGRLYYYDPMRNSPGKLPKHVSNAIAGVALCGTLSGQLFFGWLGDKLGRKKVYGITLSTMVGCALASGLSFGSTAKSVVASLCFFRFWLGFGIGGDYPLSAVIMSEYANQKTRGAFVAAVFAMQGVGILFAGGVSMLVSKLFLLAYPASEGDFVWRIVLMFGAFPAAFTYYWRMKMPETARYTALVEGNHKKAVEDMSKVLENDIPLEESNTRVAATPSLSYGFFSSKFLEKHGLHLLGTTSTWFFLDIALYSLQLAQKDIYHASGFLPSASQMNAIEEVFLLSKAMFAVALFATVPGYWCTVYFIDKIGRYKIQLGGFFAMSVCMLFLGLNYPEYRGDKCNPDETYVILFEVTLFFANFGPNSTTFIVPAELFPARFRSTCHGISAAAGKAGAIIGAFVVQSYTSNPQDESQGIKTALMALSVVNMLGFLCTFLVPETRDRSLEEISGEDKELTGNIAQDNANDKTTDTEKETKNSNADISPANSVV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01551 507 MobiDBLite consensus disorder prediction 465 507 - -
Vimu1g01551 507 FunFam Inorganic phosphate transporter 1-6 1 482 - -
Vimu1g01551 507 Pfam Sugar (and other) transporter 4 467 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu1g01551 507 Gene3D MFS general substrate transporter like domains 1 484 IPR036259 -
Vimu1g01551 507 CDD MFS_PhT 1 458 - -
Vimu1g01551 507 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 460 IPR020846 GO:0022857
Vimu1g01551 507 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 465 - -
Vimu1g01551 507 SUPERFAMILY MFS general substrate transporter 1 468 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01551 Vimu-Chr1 14455831 14457420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01551 1 469 Inorganic Solute Cotransporters AT5G43350 60.772 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01551 K08176 - gmx:100820250 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01551 1 14455831 14457420 Vimu1g01551 1 14455831 14457420 ECH