Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01550 CCTCCTTTCTGCGGCGGAAATAGACATAAGATCCAGCAGAAGATAATTAAAGACAAAATCAAGCTCCCAGCATTTTTGTCAAATGAGGCCCATTCACTGTTAAAAGGGCTTTTGCAGAAAGATGTCAGCAAACGTCTTGGCAGTGGATCAAGAAGCAGTGAGGAGATTAAAAGCCACAAGTGGTTTAAGTCTGTGAACTGGAATAAACTGGAAGCCCGTGAAGTCAGGCCAAGCTTTGTGCCAGATGTTGCTGGGAAGCAATGTGTTGCTAACTTTGAGGAGCGGTGGACTAGTATGCCTTTGCTGGATTCTCCAGCTTCTACTCCCAAAAAGGATGACACTACCTTCAGCAAGTTCTCATATACTGGTGCTCCAGTTCAGTAA 384 0.4479 PPFCGGNRHKIQQKIIKDKIKLPAFLSNEAHSLLKGLLQKDVSKRLGSGSRSSEEIKSHKWFKSVNWNKLEAREVRPSFVPDVAGKQCVANFEERWTSMPLLDSPASTPKKDDTTFSKFSYTGAPVQ 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01550 127 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 125 - -
Vimu1g01550 127 SMART pkinase_C_6 63 123 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu1g01550 127 MobiDBLite consensus disorder prediction 101 127 - -
Vimu1g01550 127 MobiDBLite consensus disorder prediction 100 127 - -
Vimu1g01550 127 Gene3D Transferase(Phosphotransferase) domain 1 1 82 - -
Vimu1g01550 127 Gene3D Phosphorylase Kinase; domain 1 83 99 - -
Vimu1g01550 127 SUPERFAMILY Protein kinase-like (PK-like) 1 111 IPR011009 -
Vimu1g01550 127 ProSiteProfiles AGC-kinase C-terminal domain profile. 63 127 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01550 Vimu-Chr1 14454354 14454952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01550 1 125 AGC Kinase Gene Family AT3G08720 63.780 4.06e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01550 K04688 - gmx:100803509 222.631