LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01547	ATGGTTTCTTCCCAGTTCTCTGTCTTAAATGAAAATAGTTCACCAAAGTCTTTCCTGAACCAGTTGGTTCTACCAAATGCACCTGATCCTTTGCTTTCTTCGAATTCTGAGGACTTTGAATTTTCTGATGTGTTTGGTGCATCTCCTGTTGGAGCCTCAATAACAGCAAGCTCCGAGAAACATGGAGATTCCACATCTACACGAGATTCTGGTGGAAAGATTTGCAATGGTTCTGATTGCATCAACATCCGCTCTCAATCTTTATTTGCTCCCACAACTTGTATTGGTCAGTCCTTGCAGCTTAGCAAACTCAACATACATGAGACAGAAGATGCATTGGACCTTGTGGAGGTCTTAACAGAAGCACAGAAAGAACTTGAACATTCTGTTAACAATGCAGCAGTAGAGAAGAATAATTTACATTTCACTGATTACTGTCTGAATAATCAGATTATTGGAGTTGAGGATTTTGAACTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGAAAGGTGTACCAGGTGAGGAGGGCAGGTACTTCTGAAATATATGCTATGAAGGTCATGCGCAAGGATAAGATCATAGAGAGAAACCATGCTGAATATGTAAAGTCTGAAAGGGATATACTAACAAAGGTGGACAACCCATTTGTTGTGCGGCTCAGATATGCTTTCCAAACCAAATATAGGTTGTACCTTGTGCTTGATTTTGTCAATGGTGGCCACCTTTTCTTTCAGCTCTATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCCGCAGAGATTATTTGTGCCGTTTCTTATCTTCATGCAAATGATGTAATGCACAGGGATCTTAAGCCTGAAAACATTCTTCTCGATGCAGATGGTCATGCTGTGTTAACAGATTTTGGCCTAGCTAAGCAATTCAATGGCACTGAAAGATCAAATTCTATGTGTGGAACTGTAGAGTACATGGCCCCTGAAATTGTAATGGGGAAAGGTCATGATAAGGCTGCTGATTGGTGGAGTGTGGGAATTTTACTATATGAAATGCTTACCGGAAAGGTTAGAATATTAGCAGGGATAAACCCAGAGACTACAAAAACCAATCCAGACTTAACAAGGGTCCAAACAGTGGAGTTGCAGCAGCTGTTATCGGTTTTTGGAAAAGTTTTTAATGAGCCCAGGGACCTACCTCCAGTTCGAAATACAATCCAATGGATCATGCTCACATTAGATGGATATTATCAAGCCTTTTCAAGGGCATTTATGAGGGTCAATGGAACCACACAAGCTCCTTTCATGCATTTTGCTGCCGAAACATCACTTGGGGTGGTTACTATAAGAGCATTGAACATGGTGAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATGGACGCAGCAGTATTCTCTCACGTCAATGTGCCCATGGAATGGTCAATTTTAAGGATTCAAATACTTCACAACTTTACAGTATTCACAGTAGCTGCATTACTTATTCTACTTCCCAGGGGATTTGTATCATCGGGTCTTGTGGGATTGTCTCTTTCTTATGCGTTGACATCGAAAGAATCCCAAGTATTTTGGAGTAGGATGTATAGCATGATGTCTGACCATATCATCTCTGCTGACAAAATCAAGCAATTCATTCACATTTCAACTCTTTTCAAGGGCAGCATTTAG	1677	0.4085	MVSSQFSVLNENSSPKSFLNQLVLPNAPDPLLSSNSEDFEFSDVFGASPVGASITASSEKHGDSTSTRDSGGKICNGSDCINIRSQSLFAPTTCIGQSLQLSKLNIHETEDALDLVEVLTEAQKELEHSVNNAAVEKNNLHFTDYCLNNQIIGVEDFELLKVVGQGAFGKVYQVRRAGTSEIYAMKVMRKDKIIERNHAEYVKSERDILTKVDNPFVVRLRYAFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARFYAAEIICAVSYLHANDVMHRDLKPENILLDADGHAVLTDFGLAKQFNGTERSNSMCGTVEYMAPEIVMGKGHDKAADWWSVGILLYEMLTGKVRILAGINPETTKTNPDLTRVQTVELQQLLSVFGKVFNEPRDLPPVRNTIQWIMLTLDGYYQAFSRAFMRVNGTTQAPFMHFAAETSLGVVTIRALNMVNRFFNNYLKLVDMDAAVFSHVNVPMEWSILRIQILHNFTVFTVAALLILLPRGFVSSGLVGLSLSYALTSKESQVFWSRMYSMMSDHIISADKIKQFIHISTLFKGSI	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g01547	558	Pfam	Protein kinase domain	157	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01547	558	ProSitePatterns	Protein kinases ATP-binding region signature.	163	186	IPR017441	GO:0005524
	Vimu1g01547	558	FunFam	Maternal embryonic leucine zipper kinase	151	358	-	-
	Vimu1g01547	558	Gene3D	ABC transporter type 1, transmembrane domain	403	552	IPR036640	GO:0005524\|GO:0016020
	Vimu1g01547	558	Gene3D	Transferase(Phosphotransferase) domain 1	237	354	-	-
	Vimu1g01547	558	Coils	Coil	119	139	-	-
	Vimu1g01547	558	Gene3D	Phosphorylase Kinase; domain 1	155	236	-	-
	Vimu1g01547	558	PANTHER	RIBOSOMAL PROTEIN S6 KINASE	108	351	-	-
	Vimu1g01547	558	FunFam	Non-specific serine/threonine protein kinase	154	258	-	-
	Vimu1g01547	558	ProSiteProfiles	Protein kinase domain profile.	157	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01547	558	SMART	serkin_6	157	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01547	558	CDD	STKc_AGC	163	351	IPR045270	GO:0004674\|GO:0005524
	Vimu1g01547	558	SUPERFAMILY	Protein kinase-like (PK-like)	143	354	IPR011009	-
	Vimu1g01547	558	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	276	288	IPR008271	GO:0004672\|GO:0006468
	Vimu1g01547	558	SUPERFAMILY	ABC transporter transmembrane region	405	548	IPR036640	GO:0005524\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01547	Vimu-Chr1	14435849	14441070	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01547	1	356	AGC Kinase Gene Family	AT3G08720	59.053	7.45e-142	417

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC-Pl	Vimu1g01547		Pkinase	2.5e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01547	K04688		-	gmx:100803509	556.984