Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01540 ATGCAAGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTACTCACCCTAGATCAGCATCTGGAAGTGACATATTATTTGATTTAGAGCCACAAATTAACGGGGACCAAAAAGTCACTTTGAAGAGAGTTAAAAGAGATCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTGTGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTACCCTGTCATCCCAACTCTGCTTACGAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAGTACTACAGCTTCCACTGAAATGGCTCTAA 366 0.4317 MQDEMGLGKTVELLACIFTHPRSASGSDILFDLEPQINGDQKVTLKRVKRDRVECICGAVSESLKYEGLWVQCDICDAWQHADCVGTLSSQLCLREYTGGGFAWMRHKWWKVVLQLPLKWL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01540 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 98 IPR013083 -
Vimu1g01540 121 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 90 - -
Vimu1g01540 121 SUPERFAMILY FYVE/PHD zinc finger 50 91 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01540 52 86 PHD Transcription Factor Family AT5G22260 51.429 6.28e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01540 K15710 - gmx:100776659 166.392