Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01537 ATGTTGGGAGTAGGCAATGAACCTGCTCCAGTTATGGTTACCAAACCATCAGAATGGGCGGGGGGTTGGTTCTGCACATTCTATGTCGTCACTTCAGCAGTTCTTCATTCTTCAAAATTGAATCAGGCGTTGGTCAGTAATGCTTACCGTGACAGTCGAACATATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAGCAAAGATTTCTCCTCTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAACTTCAAGCAATTCAAAGTCTTCAAGAATAACTGCTCGTTTCCGAAGCATAAGCGCTCTTAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCCAAAGAGGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTCTGACGGTCCCCCGTGTGTTTTGTGCGAGCTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTCGTTCTTAAGAACGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCACTAAATCATTTCCTCTCAAAGCTATCACAATCTAGTAACAGTTCTGCAACATCTGACATCGGTCATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAGGGACTCTGTCTCAGCTGCCACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCTGTTTCCCGTCTGCACCTAAGGACAAGTGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAGTTGCTGCTAGCTCCAACTTTTCCCACGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGCTACCTAAAGGGTTTAGTTCAATCCAAGCAAAAAAAGCAATTTGAAAGTCCAAACGGCTCTTCAATCTCAGGAGAAAGAACTGCAATGGCGAGAGAGGACCTGCTACGAGATATCAAGAAAGGAAAGAAATTCTCTAAAGAAGGAGAGTACTTGGCTAATGATGAAGAGAAAAAGGAAGAAAGAGGTCCACAGGGCAGTAAACTAGATAAAGAACCACTTGTCCCGTGGGTTGAAGGAGTGGAGTTGTCCACAATTGAAGGGAATGGCACCCAGGGTCAAACAACAAGGGCAACAGATTTTTTGAAATTCAGAACATCAAAGGATCAACAAAGGATAGTTGAAGGGAACATGAGAAGCATGCTATGTGAGAGTTGGGCAGCAGTAACACAGATTGGGAGTGTGGCAATGTTAAGTGAGAATTTGAAAGTAGATGGAGGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATTCACAGAATGAATCTTCCAATCTTTCAGTGCTGCATACAATTGACAGCAGTGAAAAATGTGAAGCATCCATTAGTGTCAAAGGATCATATGGGACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATTCCTTTACTACCAATAACATTACCTTCATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGATACAAAAGGATGTGAGGGGTCAACACCAGAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTTCTTGTAGAGCCATTGCTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTTCATCGGATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTCTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTTATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCTCTTACAATGCCAGAAAGTGAAGAAAATCCTAGCACAAACACAAATCTAAGACACTTACCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACTTGA 2379 0.4107 MLGVGNEPAPVMVTKPSEWAGGWFCTFYVVTSAVLHSSKLNQALVSNAYRDSRTYQNTFWWLEALHHAEQSKDFSSELIRKIEEAISGTSSNSKSSRITARFRSISALKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNSDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSSNSSATSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRTSEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKKQFESPNGSSISGERTAMAREDLLRDIKKGKKFSKEGEYLANDEEKKEERGPQGSKLDKEPLVPWVEGVELSTIEGNGTQGQTTRATDFLKFRTSKDQQRIVEGNMRSMLCESWAAVTQIGSVAMLSENLKVDGGLFAMTEKRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSVLHTIDSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHSFTTNNITFIRMKGGRKAHVAISQFRGKQNDTKGCEGSTPESIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESEENPSTNTNLRHLPPSVAAAIAAEKRLNEQRT 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01537 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 760 IPR027417 -
Vimu1g01537 792 MobiDBLite consensus disorder prediction 406 424 - -
Vimu1g01537 792 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 576 747 IPR001650 -
Vimu1g01537 792 CDD SF2_C_SNF 570 707 - -
Vimu1g01537 792 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 45 791 - -
Vimu1g01537 792 Coils Coil 116 136 - -
Vimu1g01537 792 Gene3D - 510 783 IPR027417 -
Vimu1g01537 792 MobiDBLite consensus disorder prediction 406 427 - -
Vimu1g01537 792 SMART helicmild6 604 696 IPR001650 -
Vimu1g01537 792 Pfam Helicase conserved C-terminal domain 574 696 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01537 Vimu-Chr1 14199304 14226255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01537 522 737 RAD5 or RAD16-like Gene Family AT5G22750 30.093 1.57e-19 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01537 K15710 - csav:115705427 724.931