Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01534 ATGGAAGCATATCCAAATGCGGCCTCCATGCTGAGAAGCAGAACCATAATACCTCCTCCACCATTGCTCGCCCTCAGTGCAAGGCTTCCGTCACCCTCACCGTTACTGCCGCCCTCCGTTACCCTCTCCGAACCCACACTATCGTGTTCTGGAACCCCGAAACCCTCGCTCCGCAGTTTTTCTCTCTTCTCCAATTCTCACACTCTTCAAACCATGACGCTCTCCAAGTGCTTCTCTCACATTGGGCCCACCGTCCCAATTCCGGACCCACCCAGATCAGAACCCGAACCCGAACCCGATTCCCCTCTCGTGGTGGTATCCTTCTACAAATTCGCGGATTTTCCTGATCATGCTCTCATGCGAAACCCCTTGAAGCAACTCTGTCAACGCCTGCGTGTTTCAGGTGGAATTATTCTTGCGCCTGAAGGGATCAATGGCAGCATCTGTGGGACTCGGGAGTCAGTTGAGGCTGTTCTGGCATTTGTCGAAGGTGATGATCGATTGAAGGGGCTAAGGCGAGTGGAATCACCTGTTGGTCCTGAGGAGGAGGCCATCCATCATGGTCATAGTGCTGCTTCTCCGCTTGCTGCTGGGGAAGATGCACCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAAGAGATTGTTACTCTTGGGATGCCTACTGTGTCACCTATTGAAAGGGTTGGAAAGTATGTTGGCCCAGAAGATTGGAATGCTTTGATCAATGATCCAGATACAGTGGTTATTGATGTGCGGAATAACTATGAAACCAGAATAGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTACATCATTTCGTGAATTCCCGTCTTGGGTAGAAGAGCATTTCCAGCTTAGCAAAGCAGACGATGGTGAGAATCCAAAACAACATATGCCACGCGTTGCAATGTATTGCACTGGAGGTATTCGTTGTGAGAAAGCTACAAGTCTACTTCTCAGCAAAGGTTTCAGAGAGGTTTATCACCTGGAAGGTGGAATTCTAAAATATCTTGAAGATGTTCCAGAAACAGAAAGCCTCTGGGAAGGGGAGTGCTTTGTTTTCGACAAACGAGTATCTGTGGAGCATGGCTTGGTGCCAGGAAATTTCAAACTCTGCTATGGCTGTAAACAGCCTGTGAGTGATGCTGACATGGAGGCCCCAGAATTTGAATATGGAGTTTCCTGTCCTCACTGTTTTGCACTGAAATCTGATGAAGAGAAGGAGAGAGCTCGAGCTCGACAAAGACAATTTGAGAGATGGGGCATCATAGGTGGTCCAGACAAGGGTCGCCGCACAACTACTCAAGAACCGGAAAGTGTTAGCAGGAATCCAACCCAGCTTTCACGTTCTATTTAA 1365 0.4857 MEAYPNAASMLRSRTIIPPPPLLALSARLPSPSPLLPPSVTLSEPTLSCSGTPKPSLRSFSLFSNSHTLQTMTLSKCFSHIGPTVPIPDPPRSEPEPEPDSPLVVVSFYKFADFPDHALMRNPLKQLCQRLRVSGGIILAPEGINGSICGTRESVEAVLAFVEGDDRLKGLRRVESPVGPEEEAIHHGHSAASPLAAGEDAPFRWDHVRVKLKKEIVTLGMPTVSPIERVGKYVGPEDWNALINDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEEHFQLSKADDGENPKQHMPRVAMYCTGGIRCEKATSLLLSKGFREVYHLEGGILKYLEDVPETESLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMEAPEFEYGVSCPHCFALKSDEEKERARARQRQFERWGIIGGPDKGRRTTTQEPESVSRNPTQLSRSI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01534 454 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 213 374 IPR036873 -
Vimu1g01534 454 Gene3D - 93 217 - -
Vimu1g01534 454 MobiDBLite consensus disorder prediction 439 454 - -
Vimu1g01534 454 SMART rhod_4 234 345 IPR001763 -
Vimu1g01534 454 ProSiteProfiles Rhodanese domain profile. 244 348 IPR001763 -
Vimu1g01534 454 Hamap tRNA uridine(34) hydroxylase [trhO]. 101 385 IPR020936 -
Vimu1g01534 454 MobiDBLite consensus disorder prediction 413 454 - -
Vimu1g01534 454 CDD RHOD_YceA 231 341 - -
Vimu1g01534 454 Pfam UPF0176 acylphosphatase like domain 104 216 IPR040503 -
Vimu1g01534 454 Gene3D - 218 381 IPR036873 -
Vimu1g01534 454 Pfam Rhodanese-like domain 237 341 IPR001763 -
Vimu1g01534 454 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 96 431 IPR020936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01534 Vimu-Chr1 14188623 14192880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01534 103 438 Sulfurtransferasese or Rhodanese AT2G40760 75.562 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01534 - - gmx:100784854 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01534 1 14188623 14192880 Vimu1g01534 1 14188623 14192880 ECH