Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01530 ATGGATGTGGATACATTGTTTGCTTCAATTAATCAGATCAATGTTTCTGAGCATACTGCAAAATGTGGTGTTTGCCTTAAGACTCCACCCAATATTGCATCAGATGGCCTATGGGGAAATCATAGCACAGAAGGATCTCCTTTAAAGTCATCTATGCCAATATTTCTACTCCAAGTGGTTTTGATTTACACTGTAACACGAACTTTGAATTACCCTTTAAAGAAGCTGGGTTTTCCTGCCATTTTTTCACAATTGATGGCTGGGCTCATTTTAGGACCATCCTTGAGTATATTGGAGAAACAGAAGACAATGTTGTTTCCTTATGGAAGTCAAGATACACTTGCTACTATAGCATCACTTGGTTATATGCTATTTGTCTTTGAGAATGGTGTGAAAATGGATTTCAGCATGATCACCAGAACAGGAAGACAAGGATGGATCATTGCCCTTGTGGGGTTGCTATTTCCTCTACTAATTGGTTATTCATCTGTAGAACGCATTTCTAAACTTACATCCCAGGGTACAATAGTTCATTCAACTATTGTTATATTGATGACACAGAACATGACTTCATTTACAGTGATTGCCTCCGTCCTCAATGACCTTCAAATCCTAAATTCTGAACTTGGAAGATTGGCATTATCTTCTGCACTAGTGGGTGACACGCTGAGTAATATTCTTGTAATTGCATCCGCAGCCTTTGATACCAGGAAAGTGAATGAAAATAGTATAGATTTGGTGTTGTTTTTCGCTATAATAATCATCATTTTCTTTGTCTATCGGCCTGCAATGTTCTTGGTGATTGAGCACACACCAGAAAGCCAAGAAGTGAAGGATATTTACATCAACGTTATCATTGGGGTTCTCTTTGTTTTGGGTTGGTGTTCAATGCTCTTCAATATAGAATTCATTCTTCTACCTTTCCTTTATGGATTGGCTACACCAGATGGACCTCCATTAGGATCTTCATTAGTTAAAAGGGTTCATACTTTTGGTTTAGAATTTCTCATGCCAATCTTTGTCACTACATGTGCAATGAAGATGAATTATTCCTTGGTAGAATTCACATCACCTATATTTATAGGCACCATCCTTATGATCGTTATCGGTCATCTAATGAAACTTATATCTTACCTAGCATCTGCACTCTATTTCAAGCTATCACTAAAGGATGCACTTTCTCTTGCCCTCCTTCTAGATTGCAAAGGCGTTGTGGAAGTAGCCATGTATAGCTCTGCATTGGACAAAAGGGACATCCAACCTATACGTTATACTGCGGCTCTAACAATGATAATGATCTCAAATAGCGTTGTGCAATTGCTGGTGAAACGTTTGTATGACCCTTCAAGAAAATATTTTGGCTACCAGAAAAGGAACATGTCTGATTTGAAATTTGACTCCAATCTCCGGATCCTAGTTTGTATTCATAAACATCACCACACAGTACCAATAATACCAGCTCTTGATCTATTTAATCCTACACCAATGTATCCAACAACTGTGGATGTTCTTCATCTGATTGAACTAGTAGGGCGTTCTAGTCCTATTTTCATTTCTCACAAGATGAAAAGAGGTGTTCCTTCTTTTGCAAGAAACTCTTACTCGGAGAATGTCATCCTTTCCTTCAAACTCTATGAAGATGAAAAGTTAGGTGCAACAACAATCTACCCTTATACAGCCATATCTCCACCTACACTGATGCATGAAGATGTGTGCTACCTTGCATTGGATAAAGTTGCATCAATCATCATTCTTCCTTTTCATAGAAGATGGTCTTTTGATGGAAAAATTGAACACGAGGACAAGACTGTGAGGTTATTGAATTGTAAGGTGATGGATAAGGCTCCATGCTCGGTTGGAATATTAGTGACTCGTTTTGTTCGTAAAAGTGATTCACCACTTCAATTAGCCATGATCTTTTTCGGTGGTGATGATGATAGAGAGGCTTTGTGCTTGGCCAATAGAGCAGCCAAAGACACTGCTAATGTTAACCTTGTGGTGTATCACATTACAACAAGCGAAAACAAGGATGAAAAACATAACGAGGACATTATGCTTGATCGTACAATATTAAAAAATGCTAAAAGAGAATGTTCTCGTATGAAAAATGTTGTGTATGAGGAAATAACAGTGGAGGGTGGTGCCCAAGTAGCTTCTATTCTTCACCGTATGGCAGAAGACCATGACTTTTTTATAGTTGGGAGACGCCATGGTATTGATTGTCCTCAAACAAAAAGTCTTCAAGAATGGAGTGAGTTTCCAGAGTTAGGTGTCATAGGTGATTTTCTTGCTTCTCCAGATCTTGATTGCAAATCATCAGTTTTGGTAGTGCAACAACAAAAATTTTACCATTAA 2355 0.3817 MDVDTLFASINQINVSEHTAKCGVCLKTPPNIASDGLWGNHSTEGSPLKSSMPIFLLQVVLIYTVTRTLNYPLKKLGFPAIFSQLMAGLILGPSLSILEKQKTMLFPYGSQDTLATIASLGYMLFVFENGVKMDFSMITRTGRQGWIIALVGLLFPLLIGYSSVERISKLTSQGTIVHSTIVILMTQNMTSFTVIASVLNDLQILNSELGRLALSSALVGDTLSNILVIASAAFDTRKVNENSIDLVLFFAIIIIIFFVYRPAMFLVIEHTPESQEVKDIYINVIIGVLFVLGWCSMLFNIEFILLPFLYGLATPDGPPLGSSLVKRVHTFGLEFLMPIFVTTCAMKMNYSLVEFTSPIFIGTILMIVIGHLMKLISYLASALYFKLSLKDALSLALLLDCKGVVEVAMYSSALDKRDIQPIRYTAALTMIMISNSVVQLLVKRLYDPSRKYFGYQKRNMSDLKFDSNLRILVCIHKHHHTVPIIPALDLFNPTPMYPTTVDVLHLIELVGRSSPIFISHKMKRGVPSFARNSYSENVILSFKLYEDEKLGATTIYPYTAISPPTLMHEDVCYLALDKVASIIILPFHRRWSFDGKIEHEDKTVRLLNCKVMDKAPCSVGILVTRFVRKSDSPLQLAMIFFGGDDDREALCLANRAAKDTANVNLVVYHITTSENKDEKHNEDIMLDRTILKNAKRECSRMKNVVYEEITVEGGAQVASILHRMAEDHDFFIVGRRHGIDCPQTKSLQEWSEFPELGVIGDFLASPDLDCKSSVLVVQQQKFYH 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01530 784 PANTHER CATION/H + ANTIPORTER 31 781 - -
Vimu1g01530 784 Pfam Sodium/hydrogen exchanger family 59 436 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu1g01530 784 Gene3D - 53 452 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01530 Vimu-Chr1 14054534 14057154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01530 24 781 Antiporter Super Family AT5G22900 34.032 1.16e-143 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01530 K26731 - gmx:100784321 1012.29