Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01516 ATGAGCACCTACTCGGAGGGCACCACATCAGGACCCATGGAAGATGAAGATTTGGAGAACAACAATGAGAAGACGGCAATGGTGAGAAAGAAGTCAGAAGTAGTTGTGGAGGTGGCAAGTTATAATGGTCGTTCAGAAATGCTTAGGAATTTGATGACGAATTTGCAAGCGGTGTTTCTTGGTACTAAGCTTGCTGTGCTTTTTCCAACAGTTCCTTTGGCTGTTGTTGCAACCTTTTATGGCTTTGGAAGGCCTTGGATTTTCGCTTTCAGCCTCCTTGGACTGGCTCCACTAGCTGAACGTGTTAGCTTCCTGACTGAGCAAATTGCATATTATACTGGTCCAACAGTTGGAGGGCTTCTGAATGCAACTTGTGGAAATGCAACTGAGATGATCATAGCATTATTAGCACTTCATCAGAACAAAGTAAATGTTGTGAAGTTGTCCTTGCTTGGTTCCATTCTCTCAAACCTTCTCTTGGTTCTTGGAAGCTCACTACTCTGTGGTGGTTTAGCCAATCTCAAAAGAGAGCAAAGATATGACAGAAAACAGGCTGATGTAAACTCACTGGTTCTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCATTGCTGTTCAGATACTCCTTAGGAGGGGTCCATCATTCCATAGCCACTAACACTCTTCAGTTGTCCAGAGCAAGCAGTGTTGTTATGCTTCTAGCATACCTTGCTTACATCTTCTTCCAGTTAAAAACTCACAGAAAATTGTTTGATTCACAAGAGGAGGAGGAAGACGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACGTGGTTGGTGGGTATGACATTGGTCATATCTTTGCTTTCTGAATATGTAGTAGGAACAATCGAGGCTGCTTCAGATTCTTGGGGAATTTCTGTAAGCTTCATTAGCATAATCTTGCTACCAATTGTTGGAAATGCTGCAGAACATGCTGGGTCAATCATATTTGCTTACAAGAACAAGTTGGACATATCTTTGGGGGTGGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGGTTGGTGCATGGATAATGGGTATAAGAATGGATTTAGACTTCAGTCTTCTTGAAACTGGATGTCTTGCTTTTACAATTATAGTTACAGCCTTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTACTCTGTGTTACATTGTGATTGCTGCATGTTTTTTTGTTCTGAAAACTCCTCTAACTGACCAAAATTCTATGGCGAACTGTGGAGCTAAACCATCGTTTGAAGCCATCAACACTTGA 1317 0.4207 MSTYSEGTTSGPMEDEDLENNNEKTAMVRKKSEVVVEVASYNGRSEMLRNLMTNLQAVFLGTKLAVLFPTVPLAVVATFYGFGRPWIFAFSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLCGGLANLKREQRYDRKQADVNSLVLLLGLLCHLLPLLFRYSLGGVHHSIATNTLQLSRASSVVMLLAYLAYIFFQLKTHRKLFDSQEEEEDEEKAVIGFWSAFTWLVGMTLVISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVVGAWIMGIRMDLDFSLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLTLCYIVIAACFFVLKTPLTDQNSMANCGAKPSFEAINT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01516 438 FunFam Vacuolar cation/proton exchanger 259 413 - -
Vimu1g01516 438 Pfam Sodium/calcium exchanger protein 86 243 IPR004837 GO:0016020|GO:0055085
Vimu1g01516 438 Pfam Sodium/calcium exchanger protein 269 410 IPR004837 GO:0016020|GO:0055085
Vimu1g01516 438 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 17 415 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vimu1g01516 438 NCBIfam calcium/proton exchanger 50 412 - -
Vimu1g01516 438 FunFam Vacuolar cation/proton exchanger 115 258 - -
Vimu1g01516 438 Gene3D - 264 413 IPR044880 -
Vimu1g01516 438 Gene3D - 115 263 IPR044880 -
Vimu1g01516 438 NCBIfam calcium/proton exchanger 70 412 IPR004798 GO:0006816|GO:0015369
Vimu1g01516 438 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01516 Vimu-Chr1 13601012 13604977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01516 21 420 Antiporters AT2G38170 66.259 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01516 K07300 - gmx:100802344 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02193 2 16869956 16872735 Vimu1g01516 1 13601012 13604977 PCT