Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01501 ATGTGCTGTGTTTCCAAGGGGAAACCTCAAATTGGTCTAGTGATGGAGGACGAGTGTGGAAAAGAAGAGATGCATCATAGAATTTCTGCTTTGCTTGAGTTTTCTGGTCAGGATGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGCTGGCTCAAAGAAAATAACTTATGAAGAGAGGACTCCTCTCATGGTTGCTGCTACGTTTGGAAGCCTTGATGTGTCTGCATATATTCTTGGAATGGGTGGTGTTGACGTTAACAGGGCCAGTAGGTCAGACGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGATGCTGATGGTAACAGGCCAATTGACTTGATTGTCTCTGTGGCTAATTCTATCTTCAGTCCAAGGGTGATTGACCAAACTGAGGAACAAAGGCAAGAAATGACCACATCTCGTGTTTCAAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCCAGGGCCTATTCTCATGACTGGACCGACAAAGGGGATGCCTGTGAGTATGCTCATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACAGGACAAGGCTTTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTCTTTGCACACAAGCCAGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGCTGGTGCTTCTGCATTGGAGATAGGTTCAATTAGCCCAATTGCACTTGGTTCTCCATCTGTCTTGATACCAACTTCCCCAACACCACCTTTGACTCCATCTGGAGCATCTTCTCCTATTACTGGTTCCATTTGGTCTCAATCTAATGCTTCAGTCCCCACCCTTCAGCTGCCCAAAAGCAGATTGAAGACTGCTTCAACTGCAAGAGACATTGATTTGGATTTTGAACTGCTTGGACTTGAAGCTCATCGGCGTAGACAACAGCTGATGATGGATGACATGTCTGGTCTTTCCTCTCCTAACTGGAAAAATTCCATGCCTAATAGTCCATCTTATCGTGTTTCTCTGAGTGATCACATTGGGGAGTTAAACAGGCTTTCAGGGGTGAAGCCATCAAACCTTGATGATACCTGA 1230 0.4593 MCCVSKGKPQIGLVMEDECGKEEMHHRISALLEFSGQDVDGVGLWYGRRAGSKKITYEERTPLMVAATFGSLDVSAYILGMGGVDVNRASRSDGATALHCAVAGGSAASVEVVKLLLDASADVSAVDADGNRPIDLIVSVANSIFSPRVIDQTEEQRQEMTTSRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTDKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSAGASALEIGSISPIALGSPSVLIPTSPTPPLTPSGASSPITGSIWSQSNASVPTLQLPKSRLKTASTARDIDLDFELLGLEAHRRRQQLMMDDMSGLSSPNWKNSMPNSPSYRVSLSDHIGELNRLSGVKPSNLDDT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01501 409 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Vimu1g01501 409 Gene3D - 20 166 IPR036770 -
Vimu1g01501 409 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Vimu1g01501 409 SMART ANK_2a 58 88 IPR002110 GO:0005515
Vimu1g01501 409 SMART ANK_2a 93 125 IPR002110 GO:0005515
Vimu1g01501 409 Pfam Ankyrin repeats (3 copies) 31 126 IPR002110 GO:0005515
Vimu1g01501 409 PANTHER UNKEMPT FAMILY MEMBER 209 353 IPR045234 -
Vimu1g01501 409 SUPERFAMILY Ankyrin repeat 42 138 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01501 Vimu-Chr1 13291497 13293143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01501 23 376 C2H2 Transcription Factor Family AT5G12850 40.749 7.14e-96 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01501 - - gmx:100795085 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01501 1 13291497 13293143 Vimu1g01501 1 13291497 13293143 ECH