Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01490 ATGTCTCAGAATCATTCTCCAATGGATGTTGATGGTGAGAAGTGTTATGAGAGCACCAAACGTAAAAGAGGGTCCAGGAAAAGAAAGCTTCTTGTCAACGAGAGAGTCGAGATAAAAAGCGTGGAAGAGGGTTTTCTGGGTTCATGGCACCCGGGGACGGTGGTCCGTTGCGAGAAGCAGAAGCGTTATGTCAGATATGACAATATTCTAGATGATGATGAATCAAAATACCTTGTGGATGTGGTGTGTGTTTCATCTGTTTTGGATGGTCATAGTTCTTCTGATTTTAGCAATGAACATGGATTCATCAGACCTTTGCCTCCTCCGTTTGAGTTTGGGGAGTGGGACCTTCCGTTTGGTCTGTGTGTTGATGTAAATTATCAAGAAGGCTGGTGGGAAGGTGTTATATTTGATCGCTGCAATGGAATGGGGGAGAGGAGCGTGCTCTTCCCAGATTTGGGTGATGAAATGAAGGTAGGAACTCAACAGTTGCGGGTAACTCAGGATTGGGATGAAGCTACTGAGAATTGGGAGCCACGAGGGAAGTGGGTGTTCCTTGAAGTAGTTCAGGAGCGTGAAAAGGAATCCTTTGTTGCAGTTTCAGTGAAGCAAATATGGTATGATATAAGGACCAGAAAGGATTTTGACAATATAAAACATTGGACTTGTAAGGATAAGGACTTGTGGAGAGCCCTTGTAGTGGAAGTGGTTGGTGGCTACTTTGTTCTCACACTAGAAGAAGTTTTGCCAGCTTTAAACCTTCCTGAGGAATTCTTGAAAGAAACACCAGAAATGAACTCGGTTGAACCTACTGACAACTTTCATTGTGATTCTGCACACACTAATATATTTGGTTCTGACATTGGAGTTTCAGATTGCCCTATGGAAAAAAGTGGTAACATCATTTGCTTTCAAGAGGAATGCGATAGAGATCCTTTGATGGATGGGGCATCAGAGAAGAAAATTATTTTACAGGAGGAACCTGCATCTCCTATTCAGGAGATCATGATTGGTGCTGGTGAAATAAAGCAGGTTGCTACCTGTTGTTCAAAGAAGAGAAAACGCAGAAGGTCAGTGTCCATTAGTTGGAAACCTGTGGTACTGAGCAAGGTTGAATTCTGTCCTGATGTTGTTAACCAGTATTTACTTGGACGTGGTAGCAAGAGCATTAGGGAACTTTTGAAGATTAAAGTATGGAAGCATCTAGCATATCTTGGATGGAAAATTGAGTGGAGAGATAGTAGACATTATCCTGGACGTGGACGTGGATGCTACAGGTACAAGTCACCTGATGCACAGGATGAGAAGTTTTACTTTTCAATTGTTCAAGTCTTGACACACATTCAATTGGAGTCCAACGTGAACACTGTGCATCCCCAAGTCGACCACAGTAGGATGGGTTCTGCAAATGACTCTGATATTTCACTTTTGCTTTCAGACCAACCCCCAAATGGCCAGGATCTAGATGTTTGTCCTCCAAAGGAAAGTGTTGGGCATGTTGATAGTGATGATCTATCGCAAACCTTGTCCCATTTTCTTCGAAAAGAGCCTGAACTGCATACTGCTTCACCAGCAAGTGTATCAACTGAGAGTAGAAAACATAAACACACCAGGAATTCAAAGGCCATCATGCCAAAGGGCAACATGAAAGGGTCACGTACAGAATGTCTAAGATCAAGCAAAAGGGTGCTGTCTGCCCCAAGTCTGTCACACCAACGACCTCAAAATGTTGTGTCTTGGTTAATGGGTAGGGGGGTGCTGACGCCAAGATGTAAGGTCTATTACTGGGCAGAAGGAGGCAGTAACACTGATTCAGCTCAGGGGAGGATTACTTATGATGGGATTAAGTGTAGCTGTTGCCAGAAAATATATGGTATTCGGGGCTTTGTAAATCATGCTGGTGGAAGTGGTGACTGCAGGCCTTCTGCCAGCATATTTTTGAAGAATGGTAGGTCACTCTTAGATTGCATGATAAAAGAAATGCACGATGATAGAACAAGGGAAGATATGAACAGACCATGCAATGATCTGTTGAGAGGAGAGAATGACGACATTTGTTCTGTCTGTCAATATGGTGGTGAACTTATATTATGCGACCAATGTCCATCCGCTTTTCATAAGACATGTCTTGGTTTGAATGATATTCCTCATGGTGACTGGTTTTGCCCATCATGTTGTTGTGCGATTTGCAACCAAATCAAAACAGAAGAGTCTGAGAATGTACTTTTTCTTACTTGCATTCAATGTGAACATAAATATCACGCTGGATGCTTGAAAAATAGAGAAAAGGATGAGTCAAGAAGATATATGGAAAATTGGTTCTGTGGAAAAGAGTGTGAACATGGTGATTTAAGACATGGCAAGAACACATTTAATTTTAAGGCTCCGTGTCTTCATTATATGCTGCTAGTAACATTTACTTTTGTATATTTGTTTCAGATATATGCAGGCCTACAAAGTCTATTAGGAAAGCCACTTATTGTGGGTCCGAACAATCTAACTTGGACATTGGAGAAGTTTAACAACTCTGAGAGTTCTGATGTTGGCAGTTCTCTGAATGACTCATTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGGGTGTTTTGATCCCCTAAAGAACCCTTTCACTGGTAGAGATATCATTGATGATGTTATATTCAACTCCAGGTCTGAGCTCAATCGATTGAATTTCCAGGGTTTCTACAGTGTACTTCTGGAGCAAAATGAAGAATTGATTAGTGTAGCAACTATTAGGGTGTTTGGACAGAAAGTAGCTGAGGTACCACTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAGCTTGAAAAGAACCTGGTGCATCTGGGAGTGGAGAGATTAGTCTTGCCTGCTGTTCCTGCTGTGCTAGAAACTTGGACCAAATCTTTTGGCTTTGCACAGATGTCAAATTTTGACAGGTCACAGTTCTTGGACTGTACTTTCCTAGATTTTCAGGAAACTATTATGTGCCAGAAGTTTCTGACAAGGATTCCATCTCCTCAGTCAGGTGTAACAAGAGAAACAGAACGAAAAGCACACGATGTTTTTACTCTCAGATATAGAAATGAGTTTGACAAGTCCAGTTCAGCATCAGAAGTAGACCAAGCTGAAGAGATAGAGAGAAGTAGGATGGATGAACAAGTTCTGGAGTGTGTTTCTACTCTTCCAACTTCATCATAA 3240 0.4176 MSQNHSPMDVDGEKCYESTKRKRGSRKRKLLVNERVEIKSVEEGFLGSWHPGTVVRCEKQKRYVRYDNILDDDESKYLVDVVCVSSVLDGHSSSDFSNEHGFIRPLPPPFEFGEWDLPFGLCVDVNYQEGWWEGVIFDRCNGMGERSVLFPDLGDEMKVGTQQLRVTQDWDEATENWEPRGKWVFLEVVQEREKESFVAVSVKQIWYDIRTRKDFDNIKHWTCKDKDLWRALVVEVVGGYFVLTLEEVLPALNLPEEFLKETPEMNSVEPTDNFHCDSAHTNIFGSDIGVSDCPMEKSGNIICFQEECDRDPLMDGASEKKIILQEEPASPIQEIMIGAGEIKQVATCCSKKRKRRRSVSISWKPVVLSKVEFCPDVVNQYLLGRGSKSIRELLKIKVWKHLAYLGWKIEWRDSRHYPGRGRGCYRYKSPDAQDEKFYFSIVQVLTHIQLESNVNTVHPQVDHSRMGSANDSDISLLLSDQPPNGQDLDVCPPKESVGHVDSDDLSQTLSHFLRKEPELHTASPASVSTESRKHKHTRNSKAIMPKGNMKGSRTECLRSSKRVLSAPSLSHQRPQNVVSWLMGRGVLTPRCKVYYWAEGGSNTDSAQGRITYDGIKCSCCQKIYGIRGFVNHAGGSGDCRPSASIFLKNGRSLLDCMIKEMHDDRTREDMNRPCNDLLRGENDDICSVCQYGGELILCDQCPSAFHKTCLGLNDIPHGDWFCPSCCCAICNQIKTEESENVLFLTCIQCEHKYHAGCLKNREKDESRRYMENWFCGKECEHGDLRHGKNTFNFKAPCLHYMLLVTFTFVYLFQIYAGLQSLLGKPLIVGPNNLTWTLEKFNNSESSDVGSSLNDSLAEKYSKLSVALSVMHGCFDPLKNPFTGRDIIDDVIFNSRSELNRLNFQGFYSVLLEQNEELISVATIRVFGQKVAEVPLVGTRIQYRRLGMCRILMNELEKNLVHLGVERLVLPAVPAVLETWTKSFGFAQMSNFDRSQFLDCTFLDFQETIMCQKFLTRIPSPQSGVTRETERKAHDVFTLRYRNEFDKSSSASEVDQAEEIERSRMDEQVLECVSTLPTSS 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01490 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 783 IPR013083 -
Vimu1g01490 1079 SMART ring_2 727 779 IPR001841 -
Vimu1g01490 1079 SMART ring_2 686 725 IPR001841 -
Vimu1g01490 1079 MobiDBLite consensus disorder prediction 1 20 - -
Vimu1g01490 1079 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 905 992 IPR016181 -
Vimu1g01490 1079 PANTHER PHD FINGER PROTEIN 12 385 1063 IPR042163 GO:0003714|GO:0045892
Vimu1g01490 1079 CDD NAT_SF 908 969 - -
Vimu1g01490 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 727 IPR013083 -
Vimu1g01490 1079 Pfam Agenet domain 34 108 IPR008395 -
Vimu1g01490 1079 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 851 1011 IPR000182 GO:0016747
Vimu1g01490 1079 Pfam Tify domain binding domain 608 658 IPR032308 -
Vimu1g01490 1079 MobiDBLite consensus disorder prediction 1045 1064 - -
Vimu1g01490 1079 SMART agenet_At_2 115 172 IPR014002 -
Vimu1g01490 1079 SMART agenet_At_2 28 96 IPR014002 -
Vimu1g01490 1079 CDD Tudor_Agenet_AtDUF_rpt1_3 32 108 - -
Vimu1g01490 1079 SMART PHD_3 727 779 IPR001965 -
Vimu1g01490 1079 SMART PHD_3 685 726 IPR001965 -
Vimu1g01490 1079 SUPERFAMILY FYVE/PHD zinc finger 665 725 IPR011011 -
Vimu1g01490 1079 MobiDBLite consensus disorder prediction 515 554 - -
Vimu1g01490 1079 ProSiteProfiles Zinc finger PHD-type profile. 683 728 IPR019787 -
Vimu1g01490 1079 Gene3D - 888 998 - -
Vimu1g01490 1079 Pfam PHD-finger 685 727 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01490 Vimu-Chr1 13111835 13117408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01490 30 957 PHD Transcription Factor Family AT5G58610 35.176 3.17e-168 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu1g01490 Agenet 4.6e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01490 - - vra:106763506 2053.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01490 1 13111835 13117408 Vimu1g01490 1 13111835 13117408 ECH
Vimu2g02171 2 16521678 16527374 Vimu1g01490 1 13111835 13117408 PCT