Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01482 TTGAATTTTTACAAGGATCTTTTCAACATGTCTTGCTCCGTCGCGGTTTCCAATTCGCCGGTCTTCTCTCCCTCCTCTTCTCTCTTCTGCTCTAAGCCTTCCATCATCTCTTCTTCGCCCGAATCCCTTTCGCTCTCTCTCTCCCACCTCAAACCTTCCAACACTAACACCGCCTCCTCTTCTTCTTCTCCTTCTGCTGCGGCTGCTTCCTCCTCTCCTTCTTCTCCTTTTCGCCTTCGCCTTCCCAAGCCTCCCTCTGTCTTCTCTGCCTCCTCTGCTTCCTCCACCTCCCCCAACGGCACCGTATTGAAGAGGAAGCGACCCGCCAGGCTCGACATACCCGTTTCCTCTCTCACCTTCGGGGTTCCGCCCACGCCCTCCGCTGCGGCGCGTGACGTCGTCGAGGCGGAGGAGGATGGCTTTGGGGTCTACTGCAAGAGAGGGAGGAGGGAGTACATGGAGGATCGTTACACCGCTGGGAATAATCTACGCGGTGAAAACAAACTGGCTTTTTTTGGAATATTTGATGGGCACGGAGGTGCCAAGGCTGCTGAATATGCTGCAAATAACTTAGAGAAGAATATTTTAGATGAAGTGATTATGAGAGATGAAGATGATGCCGAGGAGGCAGTGAAGCGTGGGTACCTCAACACAGACTCAGATTTCTTGAAGGAGGAACTCCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGGAACGGCAACCTTGTTGTGTCCAACGCTGGTGATTGCCGTGCTGTCATTAGCAGAGGGGGTGTTGCTGAAGCCCTAACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAGAGCCTGGGTGGCTACGTGGATTTATGCCGCGGTATTTGGAGGATCCAAGGATCTCTTGCTGTGTCTAGGGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTTAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGACTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGACATTGCTCGTTCTTTTCTCGTGGGGAGCAACAAATCACAACCATTGCTGGCTTGTAAAAAGCTTGTAGATTTGTCTGTTTCACGAGGCTCCATGGATGATACGAGCGTTATGCTAATCAAATTAGAACACTATGTTTAA 1188 0.4966 MNFYKDLFNMSCSVAVSNSPVFSPSSSLFCSKPSIISSSPESLSLSLSHLKPSNTNTASSSSSPSAAAASSSPSSPFRLRLPKPPSVFSASSASSTSPNGTVLKRKRPARLDIPVSSLTFGVPPTPSAAARDVVEAEEDGFGVYCKRGRREYMEDRYTAGNNLRGENKLAFFGIFDGHGGAKAAEYAANNLEKNILDEVIMRDEDDAEEAVKRGYLNTDSDFLKEELHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIESLGGYVDLCRGIWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARSFLVGSNKSQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01482 395 PANTHER PROTEIN PHOSPHATASE 2C 72 389 IPR015655 GO:0004722|GO:0006470
Vimu1g01482 395 MobiDBLite consensus disorder prediction 51 77 - -
Vimu1g01482 395 Gene3D - 131 394 IPR036457 -
Vimu1g01482 395 MobiDBLite consensus disorder prediction 87 102 - -
Vimu1g01482 395 ProSitePatterns PPM-type phosphatase domain signature. 171 179 IPR000222 GO:0043169
Vimu1g01482 395 SMART PP2C_4 130 389 IPR001932 -
Vimu1g01482 395 ProSiteProfiles PPM-type phosphatase domain profile. 140 391 IPR001932 -
Vimu1g01482 395 SUPERFAMILY PP2C-like 141 392 IPR036457 -
Vimu1g01482 395 MobiDBLite consensus disorder prediction 51 108 - -
Vimu1g01482 395 FunFam probable protein phosphatase 2C 25 133 394 - -
Vimu1g01482 395 CDD PP2Cc 140 391 IPR001932 -
Vimu1g01482 395 Pfam Protein phosphatase 2C 141 383 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01482 Vimu-Chr1 12899936 12901874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01482 10 395 PP2C-type Phosphatase Gene Family AT2G30020 63.930 2.03e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01482 K17506 - gmx:100797934 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01482 1 12899936 12901874 Vimu1g01482 1 12899936 12901874 ECH
Vimu2g02167 2 16393228 16396179 Vimu1g01482 1 12899936 12901874 ECH
Vimu2g02167 2 16393228 16396179 Vimu1g01482 1 12899936 12901874 PCT