Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01481 CTGCATTTTTTTTCCTCTCTGCCTCACGTTCTTCACCACACCTTCCCTTTGCCTTTTCTTCTTTCCTTTGTCTCTAGTTCTTTCACATTAACTTTTCCTTCGCATCGTCTTTCTTTTGCTTTTTTATCTTTTCCACTTAGTCACTCGTTTCCCAACCCTAATTTTCATTTCGTCGCTCCTTCACGTCGCATTTTGCATCTTCACGTCGCTGCCTCTCCGGCGTCACTCTACGTCGGCGACCTCCATTCCGACGTCTCCGACAGCCACCTCATCGATGTATTCTCCGAGTTCAAGAGCCTTAACTCCGTTCGCGTCTGCAAAGACTCCTTCCCGGCAAATCCCTCTGTTATGGCTACGTCAACTTTGTTTCTCCTCAGGACGGTGTGTTTCGCCTCCATTCACTTTTTCTTCGTTTAG 417 0.4724 MHFFSSLPHVLHHTFPLPFLLSFVSSSFTLTFPSHRLSFAFLSFPLSHSFPNPNFHFVAPSRRILHLHVAASPASLYVGDLHSDVSDSHLIDVFSEFKSLNSVRVCKDSFPANPSVMATSTLFLLRTVCFASIHFFFV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01481 138 Gene3D - 68 135 IPR012677 -
Vimu1g01481 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 112 IPR000504 GO:0003723
Vimu1g01481 138 SUPERFAMILY RNA-binding domain, RBD 59 108 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01481 Vimu-Chr1 12884965 12889025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01481 74 109 Eukaryotic Initiation Factors Gene Family AT2G36660 66.667 4.17e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01481 K13126 - gmx:100779547 77.4109