Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01474 ATGACTTCTTGGGTCAGAGGCAGGTGCGTCGGGAAGGGCGCGTTTGGAGTTGTCAACGCGGCGGTTTCCAGACCTCATGATCGGGTGTTCGCGGTGAAGTCCGTGGACCGTGGATTGGGGCACCCTCGTCGGCTGGAGGCGTTGGAGAACGAGATTCGGATTCTGAAACGAGTGGCGTCGCCACACGTGGTGGCTTATCTCGGCGACGACGTCACGTTCGAGCACGGCGGTACGGCGTCGTTCAGGAACCTTCATCTCGAGTACATGCCAGGTGGCACCGTCGCTGATCTGGACCGCGCTGACGTGGACGAGAGTTTGGTCAGGCGCTACGCGTGGTGCCTCGTGAGCGCACTGCGTGACGTCCACGCGCGCGGCTTCGTGCACTGCGACGTCAAGGGGAGGAACGTGCTCCTCACCGGCAACCGTGCGGCCGCGAAACTCGCCGACTTTGGCTCGGCGGTGGAAGTCGAAGTCCCGCAGGATTTGTTGCCCCGCGGGAGTCCGATGTGGATGGCGCCGGAGGTGGTGCGCCGGGAGCGGCAGGGGCCGGAGTCAGATGTGTGGTCGCTGGGTTGCACGGTGATCGAGATTGTCAATGGGAAACCGCCGTGGGAGGATCACGGTGTGGACACGCTGAGTCGAATCGGTTACTCGGACGAGTTGCCGGAGTTGCCAAGCAAACTGTCAGAGCTAGGGAAGGATTTTATAGAGAAGTGTCTGAGAAGAGAATGGAGAGAGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGCTTCCCTACGCCGTAGTTGAATCGTCGCCTCGTTGCGTTCTGGACTGGGTTGACTCGGAGTTCGCGGAGTCAGAACATAACGACCTTGAACAAGAAGGAGGGTGGTTAGAATTTAACCGTAAGGAAAATTCAGTTAAAAGTAGAATTAGTAAATTAGCAACAGAATCGAGGGTAAATTGGGAAACAGAGGGTTGGGAAGCGGTGAGGGAAGTTGAGCTGAACGAAGAGTCATGGTCATCAAGAACAACAAGTGAAACCGAAGAAGGGGTTAATTGGGAATTTAGCAATGAGGTGGGAGTAGGGAGTTGTGGGGAATGTTTGCATTGTGAAGGGGTAAATCGGGAAATAAAAGAGTTTGGTGAGGAGTGTAACAGAGGTGGAGGTTGGGAAAGGGGAATTTTGAGAATTTACAGTTGTAAAAGTTTGATACGATGTTATTTGTTGTTGTTAATATATTTAAATAGATTATGGTTTTGGATTATTTATAGTGTTTACCTGTGTTTATTAGAAAAGTGTGTAATGCAATTGAGAGAGACAATAAATTGGGTGGAATGTATAAGAAATTGA 1344 0.5231 MTSWVRGRCVGKGAFGVVNAAVSRPHDRVFAVKSVDRGLGHPRRLEALENEIRILKRVASPHVVAYLGDDVTFEHGGTASFRNLHLEYMPGGTVADLDRADVDESLVRRYAWCLVSALRDVHARGFVHCDVKGRNVLLTGNRAAAKLADFGSAVEVEVPQDLLPRGSPMWMAPEVVRRERQGPESDVWSLGCTVIEIVNGKPPWEDHGVDTLSRIGYSDELPELPSKLSELGKDFIEKCLRREWRERWSCDQLLQHPFLLPYAVVESSPRCVLDWVDSEFAESEHNDLEQEGGWLEFNRKENSVKSRISKLATESRVNWETEGWEAVREVELNEESWSSRTTSETEEGVNWEFSNEVGVGSCGECLHCEGVNREIKEFGEECNRGGGWERGILRIYSCKSLIRCYLLLLIYLNRLWFWIIYSVYLCLLEKCVMQLRETINWVECIRN 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01474 447 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 346 - -
Vimu1g01474 447 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vimu1g01474 447 FunFam Serine threonine protein kinase putative 2 312 - -
Vimu1g01474 447 SUPERFAMILY Protein kinase-like (PK-like) 3 283 IPR011009 -
Vimu1g01474 447 CDD STKc_MAPKKK 3 259 - -
Vimu1g01474 447 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01474 447 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01474 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vimu1g01474 447 Gene3D Transferase(Phosphotransferase) domain 1 2 333 - -
Vimu1g01474 447 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01474 Vimu-Chr1 12760875 12763680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01474 4 358 MAP Kinase Kinase Kinase AT1G07150 53.134 1.63e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu1g01474 Pkinase 3.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01474 - - var:108336699 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01474 1 12760875 12763680 Vimu1g01474 1 12760875 12763680 ECH
Vimu2g02163 2 16357459 16371489 Vimu1g01474 1 12760875 12763680 PCT