Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01468 ATGCCGTCTCAGTCCGAGTCACCCAGTAACTCACTGAGTCAACTCGCTCAGAACGTCTTCTCCGACAACAACAGCAGCATCATGCTCGCAGCCGTTATTTCCTTGCTCCTAGTCATCCTCTTTGTCCTTCTACTCCACGTGTATGCCAAGTGGTTCTTATCTCAGTCGCAATTACGTTCTCACACTCGCCGGTGGCGAACTCCGGTGACTGTCTCCGACGTTCTGGAACCTTCCCATTTCCATAGCATCAACATAGAAGCTTCAACCACCTGCCCCAAGGGCCTGGATTCAGCGACAGTTTCAGCAATTCCCATGTTTGTTCACAAAACAGAGAAAACAGAGGAATTGGAATGTGTGATCTGTTTGAGCGTTATTGAGGAGGGTGAGATTGGAAGGAGATTGCCAAAGTGTGGCCATGCTTTTCATGTTGAGTGCATTGACTTGTGGTTTACTTCACATTCCAATTGTCCCATTTGCAGAGCTCCTATTCTGGGAAGCGATTATTCTCAACCGGGTTCTGATGACGTCTTTGAGATTGTGGTTGTAACTCCTGGTTATGAGATTAGTCAGAGTGAAATCGGTGCGATGAGTGGTTCTGTTCAAGACAATTCTTCTTCTTTGTTGGGTTTCTCTTTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGACCATGTAACTGAGTTGAATGCTTCACAATGA 702 0.4615 MPSQSESPSNSLSQLAQNVFSDNNSSIMLAAVISLLLVILFVLLLHVYAKWFLSQSQLRSHTRRWRTPVTVSDVLEPSHFHSINIEASTTCPKGLDSATVSAIPMFVHKTEKTEELECVICLSVIEEGEIGRRLPKCGHAFHVECIDLWFTSHSNCPICRAPILGSDYSQPGSDDVFEIVVVTPGYEISQSEIGAMSGSVQDNSSSLLGFSLKRLLSKVFLSPDHVTELNASQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01468 233 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Vimu1g01468 233 SUPERFAMILY RING/U-box 105 165 - -
Vimu1g01468 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 167 IPR013083 -
Vimu1g01468 233 SMART ring_2 118 159 IPR001841 -
Vimu1g01468 233 Pfam Ring finger domain 117 160 IPR001841 -
Vimu1g01468 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 169 - -
Vimu1g01468 233 CDD RING-H2_EL5-like 117 160 - -
Vimu1g01468 233 FunFam RING-H2 finger protein ATL1 82 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01468 Vimu-Chr1 12671752 12674750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01468 27 161 Rapid Response to Elicitors AT3G16720 39.855 2.46e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01468 - - vra:106764505 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01468 1 12671752 12674750 Vimu1g01468 1 12671752 12674750 ECH
Vimu2g02159 2 16289904 16290635 Vimu1g01468 1 12671752 12674750 PCT