Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01461 ATGGGTGACCCAATGTGTAGGATTCGAAACAGTCCCATCTACATAATGCTGGTGGCAGAGATGGAGAATGAACTGGTTGGTGTCATTCAAGGCTTAATAAAAATGGTGACAGTTCATACTCATCCTCCAAAGGATATGGCAAAAGTGGGGTATGTCTTAGGCCTCAGAGTTTCTCCTCACAGCAGAAGAAATGGCGTTGGCTCAAGTCTTGTGCAAAGACTAGAAGAATGGTTCACTTCCAATGATGTGGAATATGCATACATGGCCACAGAGAAAGAAAACCACGCCTCAATGAACCTCTTCATGGAGAAGTTTTGCTACACCAAGTTTAGGACTCCAACTATACTCATAAACCCAGTGAATAATCATCTGTTTCAAATCTCATCCGACATTGAGATAGCTATGGTCAAGGTTGAAGATGCTGAATCCCTTTATAGAAGATTCATGGGATCCACTGAGTTCTTCCCTAGTGACATAGAGAATATACTAAGCAACAAGCTCAACCTGGGAACTTGGGTGGCTTATTTCAAAGGGGATAGTGATTTTGGTTTAGATGGAAAAGTTCCCAATAGTCGGGCTATGGTTAGTGTTTGGAACTGTGGGGAAATCTTCAAGCTAAAGATAGGGAAAGCACCTTTGTCTTGCATGTTATTCACAAAGATTTGGAGCTTGATTAGTAGAATGTTCCCATGCACGAAATTGCCAACCTTGCCCAATTTCTTTAGCCCTTTTGGGTTCTACTTCATTTATGGTGTGTATCAAGAAGGGCCATTCTCTGGAAAGTTGGTTAGGGCATTGTGCAAGTTTGTGCATAACATGGCTTCTAGGAGGGATCAGTGCAAGATCATTGTGACAGAAATTGGAGGAAAAGATGATCTGATTCATCATATTCCACATTGGAAATTGCTTTCATGCGAGGACTTGTGGTGCATAAAGGCTTTGAACAATGAAGGAACTAAAGAGTTTCATGAATTGAGCAACACTCAGCCACCAAGAACTCTCTTTGTAGACCCACGAGAAGTCTAA 1026 0.4172 MGDPMCRIRNSPIYIMLVAEMENELVGVIQGLIKMVTVHTHPPKDMAKVGYVLGLRVSPHSRRNGVGSSLVQRLEEWFTSNDVEYAYMATEKENHASMNLFMEKFCYTKFRTPTILINPVNNHLFQISSDIEIAMVKVEDAESLYRRFMGSTEFFPSDIENILSNKLNLGTWVAYFKGDSDFGLDGKVPNSRAMVSVWNCGEIFKLKIGKAPLSCMLFTKIWSLISRMFPCTKLPTLPNFFSPFGFYFIYGVYQEGPFSGKLVRALCKFVHNMASRRDQCKIIVTEIGGKDDLIHHIPHWKLLSCEDLWCIKALNNEGTKEFHELSNTQPPRTLFVDPREV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01461 341 Pfam Acetyltransferase (GNAT) family 16 104 IPR000182 GO:0016747
Vimu1g01461 341 Gene3D - 6 110 - -
Vimu1g01461 341 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 9 113 IPR016181 -
Vimu1g01461 341 CDD NAT_SF 16 87 - -
Vimu1g01461 341 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1 170 IPR000182 GO:0016747
Vimu1g01461 341 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01461 Vimu-Chr1 12590961 12592358 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vimu1g01461 Acetyltransf_1 1.8e-13 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01461 - - pvu:PHAVU_008G259100g 647.891