Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01454 ATGGGAGAACTTAAGATTAGAGGGAACCTAGTAGAAGAAAAAACATGGTCAAAGATACCCACTTTAATTAAGCCTATTCCTCTAAGAGCTCAACCATGGCAAAAACACTTCAATCCACTCCATAAGCTTCCCACCATTCCAGAAAATGATCACATTCTTACAGAGGAAAACCCTAATGGAGATCACAACACTTCCAATGAAGTCCAAGCAAACATTGAGCAAGAAATGAAAAATAAGTTTAAAAGAATCGTCTCAAACCGACATGCTGCACGAAGATCGAGATTGAAGAAACTTGCATACATCGATGAGTTGGAAAACGAATTGAAATCGTACGAGAGGAAGAAAGAAGTTCTCCATGGGCAAATTGCAGAGCAACGAAAGAAGCATCTGTCATTGGAAATTGAGAATCACACATTGAAATTTCATTTGGCTGCTCGTGAAAAGCAAAGAATTCTTCAAGAAGTTGAGATTGAAAAGAACAGAGCAGAAGTTGATAGAATGTTTCAAGTGCATAGGAGAATGGTTAATTTCAGATCGTTGCAGCTTATGACCAATTCCAACTTTAACCCTTCAGCCCTGGCCTAA 585 0.3863 MGELKIRGNLVEEKTWSKIPTLIKPIPLRAQPWQKHFNPLHKLPTIPENDHILTEENPNGDHNTSNEVQANIEQEMKNKFKRIVSNRHAARRSRLKKLAYIDELENELKSYERKKEVLHGQIAEQRKKHLSLEIENHTLKFHLAAREKQRILQEVEIEKNRAEVDRMFQVHRRMVNFRSLQLMTNSNFNPSALA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01454 194 Coils Coil 94 128 - -
Vimu1g01454 194 Coils Coil 145 165 - -
Vimu1g01454 194 SUPERFAMILY Leucine zipper domain 79 132 IPR046347 GO:0003700|GO:0006355
Vimu1g01454 194 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Vimu1g01454 194 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 139 IPR004827 GO:0003700|GO:0006355
Vimu1g01454 194 Pfam Basic region leucine zipper 80 127 IPR004827 GO:0003700|GO:0006355
Vimu1g01454 194 SMART brlzneu 73 138 IPR004827 GO:0003700|GO:0006355
Vimu1g01454 194 Gene3D - 77 160 - -
Vimu1g01454 194 PANTHER BASIC LEUCINE ZIPPER 34 62 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01454 Vimu-Chr1 12509027 12510531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01454 55 154 bZIP Transcription Factor Family AT3G58120 30.000 2.36e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu1g01454 bZIP_2 2.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01454 - - var:108336685 364.385