Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01453 ATGGAGATAGAAAGGAAGATTTGTCTAAGGTCATCACCTACTACTTGTGAAGATTGGATGAATGGTAATTGTCCAAAGGGTGAAAAATGTCCAAATTTACATTGGTGGGTTAACACAAACAACAACTTTCATAATGATAAGGCCGCTGCAGGAGGTATTATGAGAGATTCTCATGGTGAGTTTCTTTTTGCCTTTTCGAGTGTGTTAAGAGTTGATTTAGAAGCAGAAGCTGAATTATTTGCAATCAAGCTTGGAATGGAAATAGGGATATCAATGGGATATAAAAACTTGATTGTTGAAAGTGATTCACTAACAGCTATCCAACTCATTAATGGGAGAGTCATCCATCAAAGACATCCATTTTATGCTCTTGTTTCTTCAATAATACAGATGAGTGTCAATGCTGATTACATAACTTGGAATCAAGTATTTAGGGAGACCAATTCGGTAGCAGATGCTTACACTTGGGATGGAAAAAAGGCCGCTGCAGGAGGTGTTATGAGAAATTCTCATGGTGAAGAGTTGATTGAGCAGCAGAAGCTGAATTATTTGCAATCATTGGAATGGAAATAG 573 0.3735 MEIERKICLRSSPTTCEDWMNGNCPKGEKCPNLHWWVNTNNNFHNDKAAAGGIMRDSHGEFLFAFSSVLRVDLEAEAELFAIKLGMEIGISMGYKNLIVESDSLTAIQLINGRVIHQRHPFYALVSSIIQMSVNADYITWNQVFRETNSVADAYTWDGKKAAAGGVMRNSHGEELIEQQKLNYLQSLEWK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01453 190 CDD RNase_H_like 47 153 IPR044730 -
Vimu1g01453 190 Gene3D - 37 162 IPR036397 GO:0003676
Vimu1g01453 190 SUPERFAMILY Ribonuclease H-like 45 153 IPR012337 -
Vimu1g01453 190 SMART c3hfinal6 10 36 IPR000571 GO:0046872
Vimu1g01453 190 Pfam Reverse transcriptase-like 42 153 IPR002156 GO:0003676|GO:0004523
Vimu1g01453 190 PANTHER OS05G0353850 PROTEIN 37 153 - -
Vimu1g01453 190 ProSiteProfiles Zinc finger C3H1-type profile. 10 37 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01453 Vimu-Chr1 12493705 12500543 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu1g01453 RVT_3 1.2e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01453 - - pvu:PHAVU_006G058500g 108.612